Variant report

Variant	rs2088483
Chromosome Location	chr4:106216367-106216368
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs12639764	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12645144	0.86[EUR][1000 genomes]
rs13103161	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13148166	0.87[EUR][1000 genomes]
rs2101975	0.82[EUR][1000 genomes]
rs2133086	0.81[CHB][hapmap];0.88[JPT][hapmap];0.83[ASN][1000 genomes]
rs2454206	0.89[CEU][hapmap];0.89[EUR][1000 genomes]
rs2647228	0.87[EUR][1000 genomes]
rs2647246	0.82[ASN][1000 genomes]
rs2647247	0.82[ASN][1000 genomes]
rs2647251	0.89[EUR][1000 genomes]
rs2647257	0.89[CEU][hapmap];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2647268	0.83[CEU][hapmap];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2726491	0.89[CEU][hapmap];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2726513	0.80[EUR][1000 genomes]
rs55838312	0.87[EUR][1000 genomes]
rs62331159	0.83[EUR][1000 genomes]
rs62332760	0.83[EUR][1000 genomes]
rs6533183	1.00[JPT][hapmap]
rs6839705	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs6855629	0.89[CEU][hapmap];0.83[EUR][1000 genomes]
rs7663401	0.82[ASN][1000 genomes]
rs7678440	1.00[JPT][hapmap];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461609	chr4:105869548-106366209	Weak transcription Strong transcription Genic enhancers Enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	nsv470063	chr4:105869548-106366209	Transcr. at gene 5' and 3' Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
3	nsv595007	chr4:105869548-106366209	Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
4	nsv879698	chr4:106155751-106309224	Weak transcription Genic enhancers Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
5	nsv879699	chr4:106212562-106698892	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:106215800-106217600	Weak transcription	Monocytes-CD14+_RO01746	blood
2	chr4:106215800-106217800	Weak transcription	Primary monocytes fromperipheralblood	blood
3	chr4:106215800-106219000	Weak transcription	Aorta	Aorta

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