The 2.0 version of rSNPBase

Variant report

Variant rs2089807
Chromosome Location chr9:108059694-108059695
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:113 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr9:108043600-108059800 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
2 chr9:108049400-108074200 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
3 chr9:108050200-108061400 Weak transcription Rectal Mucosa Donor 29 rectum
4 chr9:108050200-108061800 Weak transcription Fetal Stomach stomach
5 chr9:108051000-108061600 Weak transcription Primary Natural Killer cells fromperipheralblood blood
6 chr9:108052400-108061400 Enhancers hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
7 chr9:108052800-108061400 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
8 chr9:108053000-108063000 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
9 chr9:108053400-108061400 Weak transcription Aorta Aorta
10 chr9:108053600-108060000 Weak transcription Duodenum Smooth Muscle Duodenum
11 chr9:108053600-108061600 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
12 chr9:108053800-108059800 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
13 chr9:108053800-108061400 Weak transcription Duodenum Mucosa Duodenum
14 chr9:108054000-108059800 Weak transcription Lung lung
15 chr9:108054000-108065400 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
16 chr9:108054000-108070000 Weak transcription Gastric stomach
17 chr9:108054200-108061800 Weak transcription Pancreas Pancrea
18 chr9:108054400-108060000 Weak transcription ES-WA7 Cell Line embryonic stem cell
19 chr9:108054400-108060400 Enhancers HepG2 liver
20 chr9:108054400-108061400 Weak transcription Right Ventricle heart
21 chr9:108054600-108061800 Weak transcription Sigmoid Colon Sigmoid Colon
22 chr9:108054600-108090800 Weak transcription Psoas Muscle Psoas
23 chr9:108054800-108061800 Weak transcription Stomach Smooth Muscle stomach
24 chr9:108055000-108061600 Weak transcription Colon Smooth Muscle Colon
25 chr9:108055000-108061600 Weak transcription Rectal Smooth Muscle rectum
26 chr9:108055200-108061400 Weak transcription Rectal Mucosa Donor 31 rectum
27 chr9:108055200-108065000 Weak transcription Primary B cells from cord blood blood
28 chr9:108055400-108061000 Weak transcription Primary neutrophils fromperipheralblood blood
29 chr9:108055600-108151200 Weak transcription Esophagus oesophagus
30 chr9:108055800-108060600 Enhancers hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
31 chr9:108056000-108059800 Weak transcription H9 Cell Line embryonic stem cell
32 chr9:108056000-108059800 Weak transcription Left Ventricle heart
33 chr9:108056000-108061400 Weak transcription Fetal Thymus thymus
34 chr9:108056000-108061800 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
35 chr9:108056000-108061800 Weak transcription Brain Germinal Matrix brain
36 chr9:108056400-108061600 Weak transcription Fetal Brain Female brain
37 chr9:108056600-108061200 Enhancers Hela-S3 cervix
38 chr9:108056600-108062200 Enhancers ES-I3 Cell Line embryonic stem cell
39 chr9:108056800-108077800 Weak transcription Primary T killer memory cells from peripheral blood blood
40 chr9:108057000-108061800 Weak transcription Thymus Thymus
41 chr9:108057000-108062000 Weak transcription Primary T helper cells PMA-I stimulated --
42 chr9:108057000-108064200 Weak transcription Primary T killer naive cells fromperipheralblood blood
43 chr9:108057000-108066800 Weak transcription Primary T helper naive cells from peripheral blood blood
44 chr9:108057200-108060200 Enhancers H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
45 chr9:108057200-108061200 Enhancers Osteobl bone
46 chr9:108057200-108061400 Weak transcription Primary T helper naive cells fromperipheralblood blood
47 chr9:108057400-108060600 Enhancers hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
48 chr9:108057400-108060600 Enhancers HSMM muscle
49 chr9:108057400-108061800 Enhancers Brain Substantia Nigra brain
50 chr9:108057400-108082600 Weak transcription Dnd41 blood

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Last update: Aug 31, 2015