Variant report

Variant	rs327982
Chromosome Location	chr9:108053031-108053032
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr9:108052708-108053114	Hela-S3	cervix:	n/a	n/a
2	NR2F2	chr9:108052535-108053061	MCF-7	breast:	n/a	n/a
3	USF2	chr9:108052696-108053053	Hela-S3	cervix:	n/a	n/a
4	MYC	chr9:108052730-108053086	MCF10A-Er-Src	breast:	n/a	chr9:108052913-108052922 chr9:108052870-108052885 chr9:108052876-108052883 chr9:108052872-108052885 chr9:108052875-108052884 chr9:108052869-108052888 chr9:108052874-108052883
5	ARID3A	chr9:108052906-108054144	HepG2	liver:	n/a	n/a
6	SIN3AK20	chr9:108052506-108053368	MCF-7	breast:	n/a	n/a
7	CEBPB	chr9:108052744-108053042	A549	lung:	n/a	n/a
8	FOS	chr9:108052737-108053066	MCF10A-Er-Src	breast:	n/a	n/a
9	EP300	chr9:108052653-108053114	T-47D	breast:	n/a	chr9:108052910-108052924
10	GATA3	chr9:108052592-108053295	SK-N-SH	brain:	n/a	chr9:108053000-108053011
11	MAX	chr9:108052691-108053059	MCF-7	breast:	n/a	chr9:108052913-108052922 chr9:108052870-108052885 chr9:108052876-108052883 chr9:108052872-108052885 chr9:108052875-108052884 chr9:108052869-108052888 chr9:108052874-108052883
12	FOS	chr9:108052737-108053074	MCF10A-Er-Src	breast:	n/a	n/a
13	GATA3	chr9:108052369-108053411	MCF-7	breast:	n/a	chr9:108052407-108052417 chr9:108053000-108053011
14	GATA3	chr9:108052582-108053142	T-47D	breast:	n/a	chr9:108053000-108053011
15	CEBPB	chr9:108052551-108053222	MCF-7	breast:	n/a	n/a
16	FOS	chr9:108052730-108053148	MCF10A-Er-Src	breast:	n/a	n/a
17	CEBPB	chr9:108052725-108053112	IMR90	lung:	n/a	n/a
18	JUND	chr9:108052593-108053258	MCF-7	breast:	n/a	n/a
19	CEBPB	chr9:108052741-108053092	HepG2	liver:	n/a	n/a
20	ZNF217	chr9:108052659-108053139	MCF-7	breast:	n/a	n/a
21	GATA3	chr9:108052468-108053354	MCF-7	breast:	n/a	chr9:108053000-108053011
22	CEBPB	chr9:108052656-108053214	MCF-7	breast:	n/a	n/a
23	USF1	chr9:108052675-108053071	ECC-1	luminal epithelium:	n/a	n/a
24	FOS	chr9:108052730-108053091	MCF10A-Er-Src	breast:	n/a	n/a
25	FOXA1	chr9:108052625-108053121	T-47D	breast:	n/a	n/a
26	GATA3	chr9:108052525-108053194	T-47D	breast:	n/a	chr9:108053000-108053011
27	JUND	chr9:108052546-108053213	T-47D	breast:	n/a	n/a
28	EP300	chr9:108052705-108053056	MCF-7	breast:	n/a	chr9:108052910-108052924
29	GATA3	chr9:108052659-108053348	SK-N-SH	brain:	n/a	chr9:108053000-108053011
30	TEAD4	chr9:108052689-108053188	MCF-7	breast:	n/a	n/a
31	HDAC2	chr9:108052689-108053123	MCF-7	breast:	n/a	n/a
32	STAT3	chr9:108052747-108053059	MCF10A-Er-Src	breast:	n/a	n/a
33	GATA3	chr9:108052805-108053162	MCF-7	breast:	n/a	chr9:108053000-108053011
34	MYC	chr9:108052737-108053033	MCF10A-Er-Src	breast:	n/a	chr9:108052913-108052922 chr9:108052870-108052885 chr9:108052876-108052883 chr9:108052872-108052885 chr9:108052875-108052884 chr9:108052869-108052888 chr9:108052874-108052883
35	USF1	chr9:108052738-108053068	ECC-1	luminal epithelium:	n/a	n/a
36	STAT3	chr9:108052715-108053133	MCF10A-Er-Src	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr9:108008269..108008775-chr9:108052722..108053326,2	MCF-7	breast:
2	chr9:108052363..108054677-chr9:108071523..108074219,3	MCF-7	breast:
3	chr9:108005087..108008498-chr9:108050324..108055404,7	MCF-7	breast:
4	chr9:108052475..108054719-chr9:108057760..108060481,3	MCF-7	breast:
5	chr9:108051884..108054784-chr9:108055791..108058847,3	MCF-7	breast:
6	chr9:108006756..108009543-chr9:108051325..108053584,2	MCF-7	breast:

Variant related genes	Relation type
SLC44A1	TF binding region
ENSG00000070214	Chromatin interaction

Extended variants
information (count: 159 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:150)

rs_ID	r²[population]
rs10820792	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10820793	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10820795	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10820796	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10991598	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10991600	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs10991601	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10991607	1.00[ASN][1000 genomes]
rs10991611	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10991612	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10991613	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10991614	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10991617	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10991618	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs12335779	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12336008	1.00[ASN][1000 genomes]
rs12343678	0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12347364	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs12348136	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12686574	1.00[ASN][1000 genomes]
rs167867	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1705490	0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1705491	0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs170582	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs179177	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs182756	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs186617	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs189020	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs193007	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs193008	0.90[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs193009	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2004725	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2089807	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2100044	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs227887	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs227888	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2441214	0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2900397	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs327944	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs327945	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs327946	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs327947	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs327948	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs327949	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs327950	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs327954	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs327955	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs327956	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs327958	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs327959	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs327960	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs327961	0.97[ASN][1000 genomes]
rs327962	0.97[ASN][1000 genomes]
rs327963	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs327964	0.97[ASN][1000 genomes]
rs327966	0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs327967	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs327968	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs327975	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs327976	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs327977	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs327978	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs327979	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs327980	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs327981	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs327983	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs327984	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs327985	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs327986	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs327987	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs327990	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs327991	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs327992	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs327993	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs327995	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs327996	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs327997	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs327998	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs327999	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs328000	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs328001	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs328002	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs328003	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs328004	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs328005	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs328006	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs328007	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs328008	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs328010	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs328011	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs328012	1.00[CHB][hapmap];0.88[ASN][1000 genomes]
rs328013	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs328014	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs328015	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs328017	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs328018	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs328019	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs328020	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs328021	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs328022	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs35144319	0.97[ASN][1000 genomes]
rs35584395	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs365629	0.91[CHB][hapmap]
rs366144	0.97[ASN][1000 genomes]
rs370629	0.97[ASN][1000 genomes]
rs371107	0.90[EUR][1000 genomes]
rs374445	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs375034	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs376926	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs377129	0.97[ASN][1000 genomes]
rs378467	1.00[CHB][hapmap];0.90[ASN][1000 genomes]
rs380104	1.00[CHB][hapmap];0.82[JPT][hapmap];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs380667	0.97[ASN][1000 genomes]
rs382940	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs383126	0.90[CHB][hapmap]
rs383272	1.00[CHB][hapmap];0.82[JPT][hapmap];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs384924	1.00[CHB][hapmap];0.82[JPT][hapmap];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs384947	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs386565	1.00[CHB][hapmap];0.82[JPT][hapmap];0.90[ASN][1000 genomes]
rs388679	0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs390336	0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs390701	0.97[ASN][1000 genomes]
rs391943	0.97[ASN][1000 genomes]
rs398454	0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs403316	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs410897	0.97[ASN][1000 genomes]
rs416641	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs418057	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs419443	0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs419834	0.89[ASN][1000 genomes]
rs420717	1.00[CHB][hapmap];0.82[JPT][hapmap];0.90[ASN][1000 genomes]
rs422084	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs423976	0.97[ASN][1000 genomes]
rs424495	1.00[CHB][hapmap];0.82[JPT][hapmap];0.90[ASN][1000 genomes]
rs435379	0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs438299	0.97[ASN][1000 genomes]
rs439308	0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs440290	1.00[CHB][hapmap];0.82[JPT][hapmap];0.90[ASN][1000 genomes]
rs442605	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs443094	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs445964	0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs446641	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs448836	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6479305	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7020772	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7020982	0.90[CHB][hapmap];0.82[JPT][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7021008	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7039398	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7858967	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7866947	0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045108	chr9:107509553-108188550	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv831678	chr9:107923522-108112813	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv893685	chr9:107940737-108083485	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv893686	chr9:107968330-108083485	Enhancers Weak transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv893687	chr9:107973277-108083485	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	nsv893688	chr9:107974761-108083485	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
7	nsv893689	chr9:107978563-108130606	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
8	nsv893690	chr9:107992706-108083485	Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
9	nsv1037750	chr9:108027692-108251733	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:74 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:108022400-108053600	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr9:108033200-108056200	Weak transcription	Primary T cells from cord blood	blood
3	chr9:108034200-108053600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr9:108043600-108057400	Weak transcription	HSMM	muscle
5	chr9:108043600-108059400	Weak transcription	NHLF	lung
6	chr9:108043600-108059800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr9:108044000-108053600	Weak transcription	Gastric	stomach
8	chr9:108044000-108053600	Weak transcription	Left Ventricle	heart
9	chr9:108044800-108056600	Weak transcription	Hela-S3	cervix
10	chr9:108046400-108053200	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr9:108046400-108053600	Weak transcription	Pancreas	Pancrea
12	chr9:108049200-108053600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr9:108049400-108074200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
14	chr9:108049800-108057400	Enhancers	Brain Inferior Temporal Lobe	brain
15	chr9:108050200-108053200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr9:108050200-108053600	Weak transcription	H1 Cell Line	embryonic stem cell
17	chr9:108050200-108054800	Weak transcription	Rectal Mucosa Donor 31	rectum
18	chr9:108050200-108061400	Weak transcription	Rectal Mucosa Donor 29	rectum
19	chr9:108050200-108061800	Weak transcription	Fetal Stomach	stomach
20	chr9:108050600-108056000	Enhancers	Placenta	Placenta
21	chr9:108051000-108053600	Enhancers	Brain Substantia Nigra	brain
22	chr9:108051000-108057800	Enhancers	HUES48 Cell Line	embryonic stem cell
23	chr9:108051000-108061600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
24	chr9:108051200-108055000	Enhancers	iPS-20b Cell Line	embryonic stem cell
25	chr9:108051400-108056600	Enhancers	Brain Hippocampus Middle	brain
26	chr9:108052000-108054000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr9:108052000-108054200	Enhancers	Fetal Intestine Large	intestine
28	chr9:108052200-108054200	Enhancers	NHEK	skin
29	chr9:108052400-108053600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr9:108052400-108054000	Enhancers	Fetal Intestine Small	intestine
31	chr9:108052400-108054200	Enhancers	Stomach Mucosa	stomach
32	chr9:108052400-108054400	Enhancers	HMEC	breast
33	chr9:108052400-108054600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr9:108052400-108054600	Enhancers	Breast Myoepithelial Primary Cells	Breast
35	chr9:108052400-108054600	Enhancers	Primary monocytes fromperipheralblood	blood
36	chr9:108052400-108056600	Enhancers	Brain Angular Gyrus	brain
37	chr9:108052400-108061400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
38	chr9:108052600-108053600	Enhancers	Brain Germinal Matrix	brain
39	chr9:108052600-108055400	Enhancers	Primary neutrophils fromperipheralblood	blood
40	chr9:108052600-108058200	Enhancers	iPS-15b Cell Line	embryonic stem cell
41	chr9:108052600-108058200	Enhancers	iPS-18 Cell Line	embryonic stem cell
42	chr9:108052800-108053200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
43	chr9:108052800-108053400	Enhancers	Osteobl	bone
44	chr9:108052800-108053600	Enhancers	Duodenum Smooth Muscle	Duodenum
45	chr9:108052800-108053600	Enhancers	Pancreatic Islets	Pancreatic Islet
46	chr9:108052800-108053800	Enhancers	Duodenum Mucosa	Duodenum
47	chr9:108052800-108054000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
48	chr9:108052800-108054000	Enhancers	Muscle Satellite Cultured Cells	--
49	chr9:108052800-108054200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
50	chr9:108052800-108054200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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