Variant report

Variant	rs2090737
Chromosome Location	chr14:72794170-72794171
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10138180	0.92[CEU][hapmap]
rs1520331	0.96[CEU][hapmap];0.90[EUR][1000 genomes]
rs1520332	0.96[CEU][hapmap];0.88[EUR][1000 genomes]
rs1996662	0.91[CHB][hapmap];0.81[JPT][hapmap];0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2238199	0.96[CEU][hapmap];0.91[JPT][hapmap];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2239224	0.92[CEU][hapmap]
rs2239231	0.92[CEU][hapmap]
rs2239233	0.82[EUR][1000 genomes]
rs2239248	1.00[CEU][hapmap];0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2239249	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2283390	0.96[CEU][hapmap];0.88[EUR][1000 genomes]
rs2332831	0.92[CEU][hapmap]
rs2529466	0.92[CEU][hapmap]
rs2681721	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2681728	0.96[CEU][hapmap];0.82[EUR][1000 genomes]
rs2681742	0.96[CEU][hapmap];0.87[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs2681754	0.92[CEU][hapmap]
rs2681761	0.96[CEU][hapmap]
rs4903013	0.81[CEU][hapmap]
rs6574067	0.81[CEU][hapmap]
rs6574071	0.81[CEU][hapmap]
rs847326	0.95[CEU][hapmap]
rs847327	0.96[CEU][hapmap]
rs847333	0.92[CEU][hapmap]
rs847347	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs847351	0.89[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs847352	0.89[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs847353	0.89[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs847354	0.89[CEU][hapmap];0.85[CHB][hapmap];0.81[JPT][hapmap];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs847356	0.90[CHB][hapmap];0.90[JPT][hapmap]
rs847357	0.86[CHB][hapmap];0.86[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530794	chr14:72113818-73034008	Enhancers Bivalent/Poised TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
2	nsv948800	chr14:72462557-73150701	Enhancers Bivalent Enhancer Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:72793800-72794600	Enhancers	Colon Smooth Muscle	Colon
2	chr14:72794000-72794400	Enhancers	Rectal Smooth Muscle	rectum
3	chr14:72794000-72794600	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain

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