Variant report

Variant	rs847357
Chromosome Location	chr14:72780817-72780818
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1568404	0.82[CEU][hapmap];0.81[JPT][hapmap]
rs1589302	0.81[EUR][1000 genomes]
rs1996662	0.86[CHB][hapmap]
rs2090737	0.86[CHB][hapmap];0.86[JPT][hapmap]
rs2238199	0.86[JPT][hapmap]
rs2239249	0.85[CHB][hapmap];0.85[JPT][hapmap]
rs68053524	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7144302	0.80[CHB][hapmap];0.86[JPT][hapmap];0.80[EUR][1000 genomes]
rs847351	0.91[CHB][hapmap];0.86[JPT][hapmap];0.81[AMR][1000 genomes]
rs847352	0.91[CHB][hapmap];0.86[JPT][hapmap]
rs847353	0.91[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.82[AMR][1000 genomes]
rs847354	0.82[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs847356	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs847359	0.93[CEU][hapmap];0.81[CHB][hapmap];0.86[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530794	chr14:72113818-73034008	Enhancers Bivalent/Poised TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
2	nsv948800	chr14:72462557-73150701	Enhancers Bivalent Enhancer Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:72775400-72782800	Enhancers	Fetal Stomach	stomach
2	chr14:72778000-72781400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr14:72778000-72782400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr14:72779400-72781000	Weak transcription	Fetal Lung	lung
5	chr14:72779600-72781200	Strong transcription	Cortex derived primary cultured neurospheres	brain
6	chr14:72780200-72781200	Weak transcription	Colon Smooth Muscle	Colon
7	chr14:72780600-72781200	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links