Variant report

Variant	rs209151
Chromosome Location	chr6:28846724-28846725
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:28838562..28840707-chr6:28844607..28847429,2	K562	blood:
2	chr6:28841283..28845553-chr6:28846644..28850092,3	MCF-7	breast:
3	chr6:28846715..28849076-chr6:28906590..28908928,2	K562	blood:
4	chr6:28845798..28848027-chr6:28890003..28892117,2	MCF-7	breast:
5	chr6:28844029..28846822-chr6:28855800..28857530,2	MCF-7	breast:
6	chr6:28835058..28836917-chr6:28845496..28848053,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000204713	Chromatin interaction

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs1061625	0.87[ASN][1000 genomes]
rs172326	0.85[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs1794588	0.87[ASN][1000 genomes]
rs184094	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2013652	0.86[ASN][1000 genomes]
rs209127	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs209140	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs209147	0.95[ASN][1000 genomes]
rs209165	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs209172	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs209177	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs209180	0.92[ASN][1000 genomes]
rs2097424	0.86[ASN][1000 genomes]
rs2148007	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2269553	0.87[ASN][1000 genomes]
rs28381661	0.85[ASN][1000 genomes]
rs28381663	0.84[ASN][1000 genomes]
rs28743260	0.85[ASN][1000 genomes]
rs2894066	0.87[ASN][1000 genomes]
rs3131067	0.80[ASN][1000 genomes]
rs3132377	0.87[ASN][1000 genomes]
rs3132380	0.83[ASN][1000 genomes]
rs3135314	0.90[ASN][1000 genomes]
rs413972	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs422331	0.97[ASN][1000 genomes]
rs429369	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4484511	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6909419	0.84[ASN][1000 genomes]
rs6912843	0.82[ASN][1000 genomes]
rs743847	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7750338	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7763940	0.85[ASN][1000 genomes]
rs7769221	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7776376	0.85[ASN][1000 genomes]
rs876737	0.80[ASN][1000 genomes]
rs9257269	0.91[ASN][1000 genomes]
rs9257270	0.90[ASN][1000 genomes]
rs9257274	0.91[ASN][1000 genomes]
rs9257280	0.90[ASN][1000 genomes]
rs9257281	0.92[ASN][1000 genomes]
rs9257328	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs929042	0.87[ASN][1000 genomes]
rs9368576	0.85[ASN][1000 genomes]
rs9378149	0.85[ASN][1000 genomes]
rs9393932	0.85[ASN][1000 genomes]
rs9393933	0.85[ASN][1000 genomes]
rs9404976	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv883518	chr6:28792477-28911802	Active TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	56 gene(s)	inside rSNPs	diseases
2	nsv883519	chr6:28792477-28936556	Transcr. at gene 5' and 3' Genic enhancers Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	57 gene(s)	inside rSNPs	diseases
3	nsv427748	chr6:28831888-28999434	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	62 gene(s)	inside rSNPs	diseases
4	nsv601212	chr6:28833225-28893927	Flanking Active TSS Weak transcription Enhancers Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	47 gene(s)	inside rSNPs	diseases
5	nsv462667	chr6:28834646-28893927	Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers Bivalent/Poised TSS Genic enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	47 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:28843600-28847000	Enhancers	K562	blood
2	chr6:28843800-28848000	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr6:28844200-28848000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr6:28844200-28848400	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr6:28844200-28848400	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr6:28844400-28848200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr6:28844600-28848000	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr6:28844800-28848200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr6:28844800-28848200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr6:28844800-28848400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr6:28845000-28847600	Enhancers	Thymus	Thymus
12	chr6:28845800-28848400	Weak transcription	Rectal Mucosa Donor 29	rectum
13	chr6:28846000-28848200	Weak transcription	A549	lung
14	chr6:28846000-28848400	Weak transcription	Fetal Intestine Small	intestine
15	chr6:28846400-28847000	Enhancers	HepG2	liver
16	chr6:28846400-28848400	Weak transcription	Fetal Intestine Large	intestine
17	chr6:28846600-28848400	Weak transcription	Fetal Thymus	thymus

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