Variant report

Variant	rs2095777
Chromosome Location	chr9:96704522-96704523
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:33124370..33126819-chr9:96702794..96705526,2	MCF-7	breast:
2	chr9:96702755..96704625-chr9:96706063..96708552,2	K562	blood:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10993017	0.87[CEU][hapmap]
rs10993047	0.87[CEU][hapmap]
rs11788160	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11788176	0.87[CEU][hapmap]
rs11789015	0.91[CEU][hapmap];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11789837	0.83[CEU][hapmap]
rs11792744	0.82[CHB][hapmap];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11793856	0.95[CEU][hapmap];0.82[CHB][hapmap];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12001386	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12004383	0.81[CEU][hapmap];0.82[CHB][hapmap];0.87[AFR][1000 genomes]
rs12684081	0.96[CEU][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1411861	0.88[CEU][hapmap];1.00[CHB][hapmap];0.80[YRI][hapmap];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1539282	0.83[CEU][hapmap]
rs2153791	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs34849895	0.81[AMR][1000 genomes]
rs35886839	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3909256	0.83[CEU][hapmap]
rs4316201	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs5014099	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs55947603	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs56335449	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62574323	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62574346	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7849645	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7858520	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893589	chr9:96624645-96884544	Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv1035418	chr9:96647940-96711409	Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Weak transcription Genic enhancers Active TSS Strong transcription	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
3	nsv824993	chr9:96699362-96725105	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv893590	chr9:96701287-96729129	Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:96703800-96705800	Bivalent Enhancer	Monocytes-CD14+_RO01746	blood
2	chr9:96704000-96705200	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood

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