Variant report

Variant	rs4316201
Chromosome Location	chr9:96731088-96731089
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:96724820..96727040-chr9:96730080..96732897,2	K562	blood:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10993017	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10993047	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11788160	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11788176	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs11789015	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11792744	1.00[CHB][hapmap];0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11793856	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12001386	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12004383	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes]
rs12684081	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1411861	0.82[CHB][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2095777	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2153791	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2398893	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34849895	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35001304	0.81[AFR][1000 genomes]
rs35480828	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35886839	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs5014099	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs55947603	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56285369	0.82[EUR][1000 genomes]
rs56335449	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62574323	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62574346	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7849645	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7858520	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893589	chr9:96624645-96884544	Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:96726600-96731800	Genic enhancers	Stomach Smooth Muscle	stomach
2	chr9:96729800-96732800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr9:96730000-96731600	Enhancers	Fetal Muscle Trunk	muscle
4	chr9:96730400-96731600	Enhancers	Gastric	stomach
5	chr9:96730600-96731200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
6	chr9:96730600-96731400	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr9:96730600-96731400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr9:96730600-96731400	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr9:96730600-96731400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr9:96730600-96731400	Enhancers	Fetal Muscle Leg	muscle
11	chr9:96730600-96731400	Enhancers	HSMMtube	muscle
12	chr9:96730600-96731600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr9:96730800-96731200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr9:96730800-96731200	Enhancers	Esophagus	oesophagus
15	chr9:96730800-96731200	Enhancers	NH-A	brain
16	chr9:96730800-96731400	Genic enhancers	Fetal Stomach	stomach
17	chr9:96730800-96731600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr9:96730800-96731600	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr9:96731000-96731200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr9:96731000-96731200	Flanking Active TSS	HepG2	liver
21	chr9:96731000-96731600	Enhancers	Placenta	Placenta
22	chr9:96731000-96731600	Bivalent Enhancer	Stomach Mucosa	stomach

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