Variant report

Variant	rs2096058
Chromosome Location	chr6:70601070-70601071
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10485244	0.88[ASN][1000 genomes]
rs17766479	0.88[ASN][1000 genomes]
rs3793036	0.88[ASN][1000 genomes]
rs3805961	0.88[ASN][1000 genomes]
rs3805962	0.88[ASN][1000 genomes]
rs3805966	0.88[ASN][1000 genomes]
rs3805968	0.88[ASN][1000 genomes]
rs3805973	0.88[ASN][1000 genomes]
rs3805977	0.88[ASN][1000 genomes]
rs59707679	0.88[ASN][1000 genomes]
rs60134810	0.86[ASN][1000 genomes]
rs6938320	0.88[ASN][1000 genomes]
rs7761968	0.88[ASN][1000 genomes]
rs9446169	0.90[ASN][1000 genomes]
rs9446170	0.89[ASN][1000 genomes]
rs9446178	0.85[ASN][1000 genomes]
rs9454908	0.91[ASN][1000 genomes]
rs9454910	0.89[ASN][1000 genomes]
rs9454914	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886140	chr6:70354682-70728202	Strong transcription Enhancers Genic enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv886141	chr6:70590638-70694162	Enhancers Weak transcription Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:70599600-70601600	Strong transcription	Primary B cells from peripheral blood	blood
2	chr6:70600000-70602000	Strong transcription	Primary B cells from cord blood	blood
3	chr6:70600600-70601600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr6:70600600-70602000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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