Variant report

Variant	rs9446178
Chromosome Location	chr6:70696224-70696225
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10485244	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17766479	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2096058	0.85[ASN][1000 genomes]
rs2345744	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs3793036	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3793038	0.82[ASN][1000 genomes]
rs3805961	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3805962	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3805966	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3805968	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3805973	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3805977	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3805978	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs3805982	0.92[AMR][1000 genomes]
rs3805986	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs3805987	0.85[ASN][1000 genomes]
rs56922945	0.87[EUR][1000 genomes]
rs59707679	0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs60134810	0.88[ASN][1000 genomes]
rs6455353	0.84[EUR][1000 genomes]
rs6906337	0.88[ASN][1000 genomes]
rs6910162	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6912321	0.84[EUR][1000 genomes]
rs6935032	0.88[ASN][1000 genomes]
rs6935585	0.84[EUR][1000 genomes]
rs6938320	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73484256	0.84[EUR][1000 genomes]
rs7756062	0.84[EUR][1000 genomes]
rs7761968	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9346367	0.82[AMR][1000 genomes]
rs9346368	0.82[AMR][1000 genomes]
rs9354904	0.82[AMR][1000 genomes]
rs9364070	0.82[AMR][1000 genomes]
rs9364071	0.82[AMR][1000 genomes]
rs9446169	0.90[ASN][1000 genomes]
rs9446170	0.89[ASN][1000 genomes]
rs9454908	0.89[ASN][1000 genomes]
rs9454910	0.89[ASN][1000 genomes]
rs9454914	0.89[ASN][1000 genomes]
rs9454930	0.84[EUR][1000 genomes]
rs9454932	0.84[EUR][1000 genomes]
rs9454935	0.84[EUR][1000 genomes]
rs9454937	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs978290	0.82[AMR][1000 genomes]
rs978291	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886140	chr6:70354682-70728202	Strong transcription Enhancers Genic enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv1026151	chr6:70621616-70946967	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv470832	chr6:70654657-70767756	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv603637	chr6:70658432-70740151	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv603638	chr6:70658432-70740306	Weak transcription ZNF genes & repeats Enhancers Strong transcription Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	nsv933674	chr6:70663616-70973112	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:70672400-70697600	Weak transcription	GM12878-XiMat	blood
2	chr6:70686600-70704200	Weak transcription	Primary B cells from cord blood	blood
3	chr6:70686800-70698200	Weak transcription	Primary B cells from peripheral blood	blood
4	chr6:70696000-70696400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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