Variant report

Variant	rs2096177
Chromosome Location	chr10:94511683-94511684
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10509646	1.00[CHB][hapmap]
rs11816075	0.84[EUR][1000 genomes]
rs1935492	0.84[ASN][1000 genomes]
rs2497337	1.00[CHB][hapmap]
rs2497346	0.84[ASN][1000 genomes]
rs2497349	1.00[CHB][hapmap];0.82[JPT][hapmap];0.84[ASN][1000 genomes]
rs28404906	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3446249	chr10:94374508-94549394	Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Weak transcription Enhancers Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:94507800-94513200	Weak transcription	Primary B cells from cord blood	blood
2	chr10:94509600-94513000	Weak transcription	K562	blood
3	chr10:94510200-94511800	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr10:94510800-94511800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr10:94510800-94511800	Enhancers	HepG2	liver
6	chr10:94511200-94513200	Weak transcription	Primary hematopoietic stem cells	blood
7	chr10:94511200-94513800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
8	chr10:94511200-94515600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr10:94511200-94515600	Weak transcription	Hela-S3	cervix
10	chr10:94511200-94516400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr10:94511400-94512200	Weak transcription	Primary B cells from peripheral blood	blood
12	chr10:94511400-94513000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr10:94511400-94513800	Weak transcription	HUVEC	blood vessel
14	chr10:94511400-94516200	Weak transcription	Osteobl	bone
15	chr10:94511400-94516400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr10:94511600-94513200	Weak transcription	Monocytes-CD14+_RO01746	blood
17	chr10:94511600-94515600	Weak transcription	Adipose Nuclei	Adipose
18	chr10:94511600-94515600	Weak transcription	Colon Smooth Muscle	Colon
19	chr10:94511600-94515800	Weak transcription	A549	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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