Variant report

Variant	rs2497349
Chromosome Location	chr10:94521565-94521566
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:94517234..94521779-chr10:94589479..94592725,5	K562	blood:

Variant related genes	Relation type
ENSG00000138190	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10509646	1.00[CHB][hapmap]
rs1935492	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2096177	0.84[ASN][1000 genomes]
rs2488065	0.82[EUR][1000 genomes]
rs2497337	1.00[CHB][hapmap]
rs2497346	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28404906	0.86[ASN][1000 genomes]
rs9420592	0.84[CEU][hapmap];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3446249	chr10:94374508-94549394	Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Weak transcription Enhancers Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:94517000-94521800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr10:94517400-94522600	Enhancers	Primary hematopoietic stem cells	blood
3	chr10:94517800-94522200	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr10:94518000-94521600	Weak transcription	Brain Anterior Caudate	brain
5	chr10:94518000-94521800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr10:94518000-94522800	Enhancers	Primary hematopoietic stem cells short term culture	blood
7	chr10:94519800-94522000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr10:94520000-94521800	Enhancers	NHLF	lung
9	chr10:94520200-94521800	Enhancers	Colon Smooth Muscle	Colon
10	chr10:94520200-94522000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr10:94520200-94522000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
12	chr10:94520200-94522200	Enhancers	Rectal Smooth Muscle	rectum
13	chr10:94520600-94521800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr10:94520600-94521800	Enhancers	A549	lung
15	chr10:94520800-94522000	Enhancers	Primary B cells from cord blood	blood
16	chr10:94520800-94522000	Enhancers	Hela-S3	cervix
17	chr10:94520800-94522800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr10:94520800-94525200	Weak transcription	Primary B cells from peripheral blood	blood
19	chr10:94520800-94526000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
20	chr10:94521000-94521800	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr10:94521200-94521800	Active TSS	Stomach Smooth Muscle	stomach
22	chr10:94521200-94522000	Active TSS	Aorta	Aorta
23	chr10:94521200-94522200	Enhancers	Primary neutrophils fromperipheralblood	blood
24	chr10:94521200-94522400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr10:94521400-94521600	Enhancers	Brain Angular Gyrus	brain
26	chr10:94521400-94521600	Flanking Active TSS	HepG2	liver
27	chr10:94521400-94521800	Enhancers	Brain Hippocampus Middle	brain
28	chr10:94521400-94522000	Flanking Active TSS	K562	blood
29	chr10:94521400-94522000	Flanking Active TSS	Osteobl	bone

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