Variant report

Variant	rs2096401
Chromosome Location	chr10:90803067-90803068
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11202937	0.86[EUR][1000 genomes]
rs11202943	0.99[ASN][1000 genomes]
rs11814536	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12360387	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1578982	0.80[EUR][1000 genomes]
rs1937335	0.80[EUR][1000 genomes]
rs1937343	0.80[EUR][1000 genomes]
rs2105436	0.80[EUR][1000 genomes]
rs6586170	0.80[EUR][1000 genomes]
rs67506473	0.92[EUR][1000 genomes]
rs7085850	0.86[EUR][1000 genomes]
rs7898005	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042848	chr10:90466032-91318474	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv540741	chr10:90466032-91318474	Enhancers Flanking Active TSS Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
3	nsv831943	chr10:90664836-90865834	Weak transcription Flanking Active TSS Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	esv3335977	chr10:90795772-90803270	Strong transcription Enhancers Weak transcription Genic enhancers	n/a	n/a	inside rSNPs	diseases
5	esv3368471	chr10:90796972-90803370	Weak transcription Genic enhancers Strong transcription Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:90771800-90808600	Weak transcription	Primary T cells from cord blood	blood
2	chr10:90780800-90804200	Weak transcription	Primary T cells fromperipheralblood	blood
3	chr10:90792200-90807200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
4	chr10:90792800-90807200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr10:90792800-90807400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr10:90792800-90814600	Weak transcription	GM12878-XiMat	blood
7	chr10:90794200-90816800	Weak transcription	Left Ventricle	heart
8	chr10:90795800-90803800	Weak transcription	Right Atrium	heart
9	chr10:90796000-90807000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr10:90801200-90809400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
11	chr10:90801400-90829400	Weak transcription	Aorta	Aorta
12	chr10:90801600-90803200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr10:90801600-90803400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr10:90801600-90803400	Enhancers	NHEK	skin
15	chr10:90801800-90803200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr10:90801800-90803400	Enhancers	HMEC	breast
17	chr10:90801800-90804000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr10:90802000-90803200	Strong transcription	Ovary	ovary
19	chr10:90802400-90803200	Enhancers	Breast Myoepithelial Primary Cells	Breast
20	chr10:90802600-90804400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr10:90802600-90806800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr10:90802600-90815000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr10:90802800-90803200	Enhancers	Fetal Intestine Small	intestine

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