Variant report

Variant	rs209789
Chromosome Location	chr6:11905782-11905783
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:11767994..11770817-chr6:11904764..11906319,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000111863	Chromatin interaction

Extended variants
information (count: 74 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:74)

rs_ID	r²[population]
rs12206622	0.95[EUR][1000 genomes]
rs13198234	0.97[EUR][1000 genomes]
rs13198354	0.85[EUR][1000 genomes]
rs13199275	0.97[EUR][1000 genomes]
rs1830984	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1830985	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1985982	0.92[EUR][1000 genomes]
rs2092570	0.97[EUR][1000 genomes]
rs2092571	0.97[EUR][1000 genomes]
rs209788	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs209790	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs209791	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs209792	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs209793	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs209794	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2103739	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2206928	0.92[ASN][1000 genomes]
rs2746266	0.88[EUR][1000 genomes]
rs2746267	0.97[EUR][1000 genomes]
rs2765779	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2765780	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2765781	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2876245	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs28768426	0.95[EUR][1000 genomes]
rs28885688	0.97[EUR][1000 genomes]
rs4711466	0.97[EUR][1000 genomes]
rs4711467	0.97[EUR][1000 genomes]
rs4711468	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4711469	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4714012	0.97[EUR][1000 genomes]
rs4714017	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6457947	0.97[EUR][1000 genomes]
rs6457948	0.97[EUR][1000 genomes]
rs6457949	0.97[EUR][1000 genomes]
rs6457950	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6457951	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6457952	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6457953	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6457954	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6457955	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6457958	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6457959	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6457960	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6899485	0.97[EUR][1000 genomes]
rs6901960	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6909423	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6909693	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6910008	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6910727	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6910810	0.97[EUR][1000 genomes]
rs6911172	0.97[EUR][1000 genomes]
rs6915058	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6916469	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6919781	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6926450	0.97[EUR][1000 genomes]
rs6929425	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6932972	0.97[EUR][1000 genomes]
rs6932981	0.97[EUR][1000 genomes]
rs6934027	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6937349	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6937513	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6940133	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs6941984	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7452547	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7738835	0.97[EUR][1000 genomes]
rs7746759	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7762845	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7762981	0.97[EUR][1000 genomes]
rs7767282	0.97[EUR][1000 genomes]
rs7776229	0.95[EUR][1000 genomes]
rs9296195	0.92[EUR][1000 genomes]
rs9368945	0.92[EUR][1000 genomes]
rs9368948	0.81[ASN][1000 genomes]
rs9470408	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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