Variant report

Variant	rs2206928
Chromosome Location	chr6:11877032-11877033
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs209788	0.90[ASN][1000 genomes]
rs209789	0.92[ASN][1000 genomes]
rs209793	0.92[ASN][1000 genomes]
rs209794	0.88[MEX][hapmap]
rs2103739	0.81[AMR][1000 genomes]
rs2765781	0.81[AMR][1000 genomes]
rs4713986	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6457951	0.92[ASN][1000 genomes]
rs7740058	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7744529	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7757312	0.82[ASN][1000 genomes]
rs7762845	0.92[ASN][1000 genomes]
rs7768612	0.81[EUR][1000 genomes]
rs7771753	0.83[ASN][1000 genomes]
rs9366906	0.85[ASN][1000 genomes]
rs976931	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv5201	chr6:11833966-11879236	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11869000-11885400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:11871200-11877400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr6:11876000-11877600	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr6:11876000-11878400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr6:11876200-11880400	Enhancers	Fetal Stomach	stomach
6	chr6:11876800-11878600	Flanking Active TSS	GM12878-XiMat	blood
7	chr6:11877000-11877800	Enhancers	Primary B cells from peripheral blood	blood
8	chr6:11877000-11878600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr6:11877000-11879800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr6:11877000-11880200	Enhancers	Fetal Lung	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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