Variant report

Variant	rs7768612
Chromosome Location	chr6:11875787-11875788
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:11870406..11872624-chr6:11873723..11875888,2	K562	blood:
2	chr6:11867335..11870900-chr6:11873220..11876785,3	K562	blood:
3	chr6:11868745..11870307-chr6:11874002..11876924,2	K562	blood:

Extended variants
information (count: 78 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:77)

rs_ID	r²[population]
rs12206622	0.81[ASN][1000 genomes]
rs13198234	0.81[ASN][1000 genomes]
rs13198354	0.80[ASN][1000 genomes]
rs13199275	0.81[ASN][1000 genomes]
rs1830984	0.89[CHB][hapmap];0.85[JPT][hapmap];0.82[ASN][1000 genomes]
rs1830985	0.82[ASN][1000 genomes]
rs1985982	0.85[ASN][1000 genomes]
rs2092570	0.84[CHB][hapmap];0.85[JPT][hapmap];0.81[ASN][1000 genomes]
rs2092571	0.89[CHB][hapmap];0.85[JPT][hapmap];0.81[ASN][1000 genomes]
rs209790	0.81[ASN][1000 genomes]
rs209791	0.81[ASN][1000 genomes]
rs209792	0.81[ASN][1000 genomes]
rs209794	0.89[CHB][hapmap];0.85[JPT][hapmap];0.80[ASN][1000 genomes]
rs2103739	0.89[CHB][hapmap];0.85[JPT][hapmap];0.81[ASN][1000 genomes]
rs2206928	0.81[EUR][1000 genomes]
rs2746266	0.81[ASN][1000 genomes]
rs2746267	0.81[ASN][1000 genomes]
rs2765779	0.81[ASN][1000 genomes]
rs2765780	0.81[ASN][1000 genomes]
rs2765781	0.81[ASN][1000 genomes]
rs2876245	0.81[ASN][1000 genomes]
rs28768426	0.81[ASN][1000 genomes]
rs28885688	0.81[ASN][1000 genomes]
rs4711466	0.81[ASN][1000 genomes]
rs4711467	0.81[ASN][1000 genomes]
rs4711468	0.81[ASN][1000 genomes]
rs4711469	0.81[ASN][1000 genomes]
rs4713986	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4714012	0.81[ASN][1000 genomes]
rs4714017	0.81[ASN][1000 genomes]
rs6457947	0.81[ASN][1000 genomes]
rs6457948	0.81[ASN][1000 genomes]
rs6457949	0.81[ASN][1000 genomes]
rs6457950	0.81[ASN][1000 genomes]
rs6457952	0.81[ASN][1000 genomes]
rs6457953	0.81[ASN][1000 genomes]
rs6457954	0.81[ASN][1000 genomes]
rs6457955	0.81[ASN][1000 genomes]
rs6457958	0.81[ASN][1000 genomes]
rs6457959	0.81[ASN][1000 genomes]
rs6457960	0.81[ASN][1000 genomes]
rs6899485	0.81[ASN][1000 genomes]
rs6901960	0.81[ASN][1000 genomes]
rs6909423	0.81[ASN][1000 genomes]
rs6909693	0.81[ASN][1000 genomes]
rs6910008	0.81[ASN][1000 genomes]
rs6910727	0.81[ASN][1000 genomes]
rs6910810	0.81[ASN][1000 genomes]
rs6911172	0.81[ASN][1000 genomes]
rs6915058	0.81[ASN][1000 genomes]
rs6916469	0.81[ASN][1000 genomes]
rs6919781	0.81[ASN][1000 genomes]
rs6926450	0.81[ASN][1000 genomes]
rs6929425	0.81[ASN][1000 genomes]
rs6932972	0.81[ASN][1000 genomes]
rs6932981	0.81[ASN][1000 genomes]
rs6934027	0.81[ASN][1000 genomes]
rs6937349	0.81[ASN][1000 genomes]
rs6937513	0.81[ASN][1000 genomes]
rs6940133	0.81[ASN][1000 genomes]
rs6941984	0.81[ASN][1000 genomes]
rs7452547	0.81[ASN][1000 genomes]
rs7738835	0.81[ASN][1000 genomes]
rs7740058	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7744529	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7746759	0.81[ASN][1000 genomes]
rs7757312	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7762981	0.81[ASN][1000 genomes]
rs7767282	0.81[ASN][1000 genomes]
rs7771753	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7776229	0.81[ASN][1000 genomes]
rs9296195	0.84[ASN][1000 genomes]
rs9366906	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9368945	0.84[ASN][1000 genomes]
rs9470330	0.86[AFR][1000 genomes]
rs9470408	0.81[ASN][1000 genomes]
rs976931	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv5201	chr6:11833966-11879236	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11869000-11885400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:11871200-11876200	Weak transcription	Fetal Stomach	stomach
3	chr6:11871200-11877400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr6:11874200-11876400	ZNF genes & repeats	GM12878-XiMat	blood
5	chr6:11874800-11876200	Enhancers	Ovary	ovary
6	chr6:11875400-11876000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr6:11875400-11876000	Enhancers	Cortex derived primary cultured neurospheres	brain

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