Variant report

Variant	rs2098660
Chromosome Location	chr5:97829685-97829686
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10042687	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10053301	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10478691	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10478706	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10478722	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10478759	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12515428	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12659519	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1318105	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1422719	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1549121	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1559130	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1559131	0.83[EUR][1000 genomes]
rs1560180	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17658337	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17715002	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2042965	0.82[EUR][1000 genomes]
rs2086144	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2112660	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs28588552	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs28622885	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3849788	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs3860805	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs457051	0.82[AMR][1000 genomes]
rs4703102	0.87[EUR][1000 genomes]
rs6595648	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6860932	1.00[ASN][1000 genomes]
rs6865769	0.83[EUR][1000 genomes]
rs6874177	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6888021	0.82[EUR][1000 genomes]
rs7708004	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7709076	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7716638	0.83[EUR][1000 genomes]
rs891057	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs985150	0.82[EUR][1000 genomes]
rs985579	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882408	chr5:97616089-97836794	Enhancers Strong transcription ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1018555	chr5:97719032-97873906	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv882412	chr5:97796120-97953719	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:97825400-97832800	Weak transcription	NHDF-Ad	bronchial
2	chr5:97827000-97833400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr5:97828400-97833200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr5:97828400-97837600	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr5:97828600-97832800	Weak transcription	HUVEC	blood vessel

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