Variant report
| Variant | rs2099184 |
|---|---|
| Chromosome Location | chr2:183349857-183349858 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:28)
| rs_ID | r2[population] |
|---|---|
| rs10178586 | 0.82[EUR][1000 genomes] |
| rs10497601 | 0.82[EUR][1000 genomes] |
| rs1125184 | 0.81[EUR][1000 genomes] |
| rs12465662 | 0.82[EUR][1000 genomes] |
| rs12465755 | 0.82[EUR][1000 genomes] |
| rs12466937 | 0.82[EUR][1000 genomes] |
| rs12470124 | 0.82[EUR][1000 genomes] |
| rs13385209 | 0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs13417404 | 0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1367204 | 0.82[EUR][1000 genomes] |
| rs1430141 | 0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1430160 | 0.82[EUR][1000 genomes] |
| rs16823285 | 0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs34744930 | 0.82[EUR][1000 genomes] |
| rs35809203 | 0.82[EUR][1000 genomes] |
| rs4666582 | 0.81[EUR][1000 genomes] |
| rs4666585 | 0.82[EUR][1000 genomes] |
| rs4666835 | 0.81[EUR][1000 genomes] |
| rs4666836 | 0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4666838 | 0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs62187660 | 0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs62187661 | 0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs62188295 | 0.82[EUR][1000 genomes] |
| rs62188296 | 0.81[EUR][1000 genomes] |
| rs62189024 | 0.82[EUR][1000 genomes] |
| rs62189025 | 0.82[EUR][1000 genomes] |
| rs62189027 | 0.82[EUR][1000 genomes] |
| rs6760364 | 0.82[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv533782 | chr2:183059730-183500040 | Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 2 | nsv1009882 | chr2:183213152-184171519 | Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 35 gene(s) | inside rSNPs | diseases |
| 3 | esv2830429 | chr2:183300759-183545378 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr2:183343200-183353800 | Weak transcription | H1 BMP4 Derived Trophoblast Cultured Cells | ES cell derived |
| 2 | chr2:183347800-183355800 | Weak transcription | H9 Derived Neuron Cultured Cells | ES cell derived |
