Variant report

Variant	rs4666838
Chromosome Location	chr2:183348118-183348119
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10178586	0.83[EUR][1000 genomes]
rs10497601	0.83[EUR][1000 genomes]
rs10497602	0.84[JPT][hapmap]
rs10497603	0.84[JPT][hapmap]
rs1125184	0.81[EUR][1000 genomes]
rs12465662	0.83[EUR][1000 genomes]
rs12465755	0.83[EUR][1000 genomes]
rs12466618	0.83[JPT][hapmap]
rs12466937	0.83[EUR][1000 genomes]
rs12468232	0.84[JPT][hapmap]
rs12470124	0.83[EUR][1000 genomes]
rs12478132	0.84[JPT][hapmap]
rs12479259	0.82[JPT][hapmap]
rs13385209	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13417404	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1346775	0.84[JPT][hapmap]
rs1367204	0.83[EUR][1000 genomes]
rs1430141	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1430160	0.83[EUR][1000 genomes]
rs1583112	0.84[JPT][hapmap]
rs16823285	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17265189	0.84[JPT][hapmap]
rs17356296	0.84[JPT][hapmap]
rs17356303	0.84[JPT][hapmap]
rs17356331	0.84[JPT][hapmap]
rs1897104	0.86[JPT][hapmap]
rs2099184	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34744930	0.83[EUR][1000 genomes]
rs35809203	0.83[EUR][1000 genomes]
rs4496292	0.84[JPT][hapmap]
rs4666582	0.82[EUR][1000 genomes]
rs4666585	0.83[EUR][1000 genomes]
rs4666835	0.82[EUR][1000 genomes]
rs4666836	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4666837	0.82[JPT][hapmap]
rs4666840	0.84[JPT][hapmap]
rs4666841	0.84[JPT][hapmap]
rs62187660	0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62187661	0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62188295	0.83[EUR][1000 genomes]
rs62188296	0.81[EUR][1000 genomes]
rs62188297	0.80[EUR][1000 genomes]
rs62189024	0.83[EUR][1000 genomes]
rs62189025	0.83[EUR][1000 genomes]
rs62189027	0.83[EUR][1000 genomes]
rs6760364	0.83[EUR][1000 genomes]
rs934264	0.80[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533782	chr2:183059730-183500040	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1009882	chr2:183213152-184171519	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
3	esv2830429	chr2:183300759-183545378	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:183343200-183353800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr2:183347000-183348200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr2:183347800-183355800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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