Variant report

Variant	rs2099301
Chromosome Location	chr7:3696883-3696884
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 71 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs1025456	1.00[CEU][hapmap];0.86[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs10282067	0.88[CHB][hapmap];0.81[JPT][hapmap]
rs10951278	0.88[CHB][hapmap];0.87[JPT][hapmap]
rs11773492	0.88[CHB][hapmap];0.81[JPT][hapmap]
rs1202228	0.83[EUR][1000 genomes]
rs1202230	0.83[EUR][1000 genomes]
rs12535699	0.83[CHB][hapmap];0.87[JPT][hapmap]
rs13221445	0.81[CHB][hapmap];1.00[MEX][hapmap]
rs13242602	1.00[MEX][hapmap]
rs13247897	0.80[EUR][1000 genomes]
rs1529655	0.88[CHB][hapmap];0.81[JPT][hapmap]
rs1529658	0.86[CHB][hapmap];0.80[JPT][hapmap]
rs1529659	0.88[CHB][hapmap];0.81[JPT][hapmap]
rs1529660	0.88[CHB][hapmap];0.81[JPT][hapmap]
rs1529661	0.88[CHB][hapmap];0.87[JPT][hapmap]
rs16870889	1.00[MEX][hapmap]
rs17133527	1.00[MEX][hapmap]
rs17133776	1.00[ASW][hapmap]
rs1864839	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2060180	0.88[CHB][hapmap];0.87[JPT][hapmap]
rs2060181	0.88[CHB][hapmap];0.93[JPT][hapmap]
rs2060184	0.88[CHB][hapmap];0.87[JPT][hapmap]
rs2099300	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2116617	0.88[CHB][hapmap];0.87[JPT][hapmap]
rs2116619	0.88[CHB][hapmap];0.87[JPT][hapmap]
rs2163686	0.83[CHB][hapmap];0.87[JPT][hapmap]
rs2195866	0.88[CHB][hapmap];0.87[JPT][hapmap]
rs2217610	0.88[CHB][hapmap];0.81[JPT][hapmap]
rs2568526	1.00[CEU][hapmap]
rs34524889	0.81[EUR][1000 genomes]
rs36199379	0.81[EUR][1000 genomes]
rs6462164	0.92[CHB][hapmap]
rs6462227	0.82[CHB][hapmap];0.81[JPT][hapmap]
rs6462231	0.88[CHB][hapmap];0.87[JPT][hapmap]
rs6462233	0.88[CHB][hapmap];0.81[JPT][hapmap]
rs6462234	0.88[CHB][hapmap];0.87[JPT][hapmap]
rs6462242	0.88[CHB][hapmap]
rs6944958	1.00[MEX][hapmap]
rs6945746	0.81[CHB][hapmap]
rs6951842	0.82[CEU][hapmap];0.87[CHB][hapmap];0.87[JPT][hapmap];0.81[ASN][1000 genomes]
rs6965119	0.83[CHB][hapmap];0.87[JPT][hapmap]
rs6967202	0.86[JPT][hapmap]
rs6970486	0.88[CHB][hapmap];0.81[JPT][hapmap]
rs7789049	0.88[CHB][hapmap];0.81[JPT][hapmap]
rs7789520	0.87[CHB][hapmap];0.93[JPT][hapmap];0.83[ASN][1000 genomes]
rs7789530	0.94[CHB][hapmap];0.81[JPT][hapmap]
rs7790719	0.87[JPT][hapmap]
rs7792769	0.81[CHB][hapmap];0.81[JPT][hapmap]
rs7807683	0.83[CHB][hapmap];0.81[JPT][hapmap]
rs7810971	0.82[CHB][hapmap];0.81[JPT][hapmap]
rs891857	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[TSI][hapmap]
rs930200	0.93[CHB][hapmap]
rs930201	0.88[CHB][hapmap];0.87[JPT][hapmap]
rs992141	0.88[CHB][hapmap];0.81[JPT][hapmap]
rs992142	0.88[CHB][hapmap];0.81[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018173	chr7:3258989-3879848	Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv538660	chr7:3258989-3879848	Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1016555	chr7:3298478-3872512	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv538661	chr7:3298478-3872512	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv916071	chr7:3423207-3697428	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv830888	chr7:3577214-3776276	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv948390	chr7:3609821-3734421	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv1033415	chr7:3616095-3753563	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv538680	chr7:3616095-3753563	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	nsv1016930	chr7:3627295-3705057	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
11	nsv530553	chr7:3629504-3736851	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
12	nsv1016270	chr7:3650882-3753563	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
13	nsv538681	chr7:3650882-3753563	Strong transcription Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
14	nsv1021650	chr7:3665232-4577439	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
15	nsv605934	chr7:3687012-3738147	Enhancers ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
16	nsv1024837	chr7:3693237-3753563	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:3688400-3703200	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr7:3688800-3703200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr7:3688800-3728400	Weak transcription	Aorta	Aorta
4	chr7:3694400-3705800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr7:3695800-3699400	Weak transcription	Stomach Mucosa	stomach
6	chr7:3696000-3707800	Weak transcription	Pancreas	Pancrea
7	chr7:3696800-3697200	Enhancers	Fetal Muscle Trunk	muscle
8	chr7:3696800-3697400	Enhancers	Fetal Muscle Leg	muscle
9	chr7:3696800-3697400	Enhancers	HSMM	muscle
10	chr7:3696800-3697600	Enhancers	HSMMtube	muscle

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