Variant report

Variant	rs2100041
Chromosome Location	chr5:16108838-16108839
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10051368	1.00[AMR][1000 genomes]
rs10051545	0.83[AMR][1000 genomes]
rs10059842	0.83[AMR][1000 genomes]
rs10059919	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10068941	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10070121	1.00[AMR][1000 genomes]
rs10074672	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1446032	0.83[AMR][1000 genomes]
rs1446036	0.83[AMR][1000 genomes]
rs2121182	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3933641	1.00[AMR][1000 genomes]
rs9312903	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9312905	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9312906	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830217	chr5:16004704-16225229	Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:16107200-16109000	Weak transcription	Fetal Heart	heart
2	chr5:16108000-16109400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr5:16108400-16109000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
4	chr5:16108600-16111800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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