Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs16890441	0.98[EUR][1000 genomes]
rs4709340	0.98[EUR][1000 genomes]
rs55875257	0.87[EUR][1000 genomes]
rs56366023	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs59722191	0.98[EUR][1000 genomes]
rs73585056	0.98[EUR][1000 genomes]
rs73585061	0.98[EUR][1000 genomes]
rs73585064	0.95[EUR][1000 genomes]
rs73586917	0.95[EUR][1000 genomes]
rs73586920	0.95[EUR][1000 genomes]
rs73586921	0.91[EUR][1000 genomes]
rs73586924	0.91[EUR][1000 genomes]
rs73586925	0.91[EUR][1000 genomes]
rs73586928	0.89[EUR][1000 genomes]
rs73586930	0.90[EUR][1000 genomes]
rs73586931	0.89[EUR][1000 genomes]
rs73586936	0.89[EUR][1000 genomes]
rs7742825	0.95[EUR][1000 genomes]
rs7743711	0.87[EUR][1000 genomes]
rs7760303	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2763604	chr6:159509373-159942955	Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv1019191	chr6:159555100-160043247	Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv886800	chr6:159905527-159985424	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:159904800-159916800	Weak transcription	Aorta	Aorta
2	chr6:159909800-159911200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr6:159910800-159912600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr6:159911000-159912600	Enhancers	Placenta Amnion	Placenta Amnion
5	chr6:159911000-159912600	Enhancers	Stomach Smooth Muscle	stomach
6	chr6:159911000-159913200	Enhancers	Adipose Nuclei	Adipose

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