Variant report

Variant	rs210205
Chromosome Location	chr6:33513161-33513162
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:33511493..33513337-chr6:33513833..33516085,2	K562	blood:
2	chr6:33419305..33423714-chr6:33512758..33516549,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000213588	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs1794687	0.81[AMR][1000 genomes]
rs191901	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs210150	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs210151	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs210197	0.82[AMR][1000 genomes]
rs210201	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs210202	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs210203	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs210204	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs210206	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs210208	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs210209	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs210210	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs367408	0.81[AMR][1000 genomes]
rs367897	0.81[AMR][1000 genomes]
rs368716	0.81[AMR][1000 genomes]
rs371155	0.81[AMR][1000 genomes]
rs380163	0.81[AMR][1000 genomes]
rs386879	0.81[AMR][1000 genomes]
rs396516	0.81[AMR][1000 genomes]
rs404778	0.81[AMR][1000 genomes]
rs526726	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6906961	0.81[ASN][1000 genomes]
rs6929165	0.81[ASN][1000 genomes]
rs73404347	0.81[AMR][1000 genomes]
rs9469481	0.81[AMR][1000 genomes]
rs9469483	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv602832	chr6:33382241-33520221	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	esv2763548	chr6:33496201-33524779	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:33511200-33515400	Weak transcription	HUES6 Cell Line	embryonic stem cell
2	chr6:33512000-33516000	Weak transcription	Primary neutrophils fromperipheralblood	blood
3	chr6:33512400-33513800	Enhancers	HepG2	liver
4	chr6:33512800-33513200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr6:33512800-33514000	Enhancers	K562	blood
6	chr6:33513000-33513200	Enhancers	Placenta	Placenta

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