Variant report

Variant	rs6906961
Chromosome Location	chr6:33516013-33516014
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:33511493..33513337-chr6:33513833..33516085,2	K562	blood:
2	chr6:33419305..33423714-chr6:33512758..33516549,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000213588	Chromatin interaction

Extended variants
information (count: 87 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:85)

rs_ID	r²[population]
rs11751684	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs11752179	0.80[AMR][1000 genomes]
rs17627049	0.80[AMR][1000 genomes]
rs191901	0.84[ASN][1000 genomes]
rs210150	0.81[ASN][1000 genomes]
rs210151	0.84[ASN][1000 genomes]
rs210201	0.82[ASN][1000 genomes]
rs210202	0.82[ASN][1000 genomes]
rs210203	0.82[ASN][1000 genomes]
rs210204	0.82[ASN][1000 genomes]
rs210205	0.81[ASN][1000 genomes]
rs210206	0.81[ASN][1000 genomes]
rs210208	0.82[ASN][1000 genomes]
rs210209	0.82[ASN][1000 genomes]
rs210210	0.82[ASN][1000 genomes]
rs34222093	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs34308820	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs35150558	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs35347341	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs35381461	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs3846853	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs3846854	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs3912039	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs3912040	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs3912041	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs3916674	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4376348	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs5000098	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs526726	0.82[ASN][1000 genomes]
rs55836835	0.80[AMR][1000 genomes]
rs55963187	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs56043172	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs56100919	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs56199698	0.80[AMR][1000 genomes]
rs56205713	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs56206922	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62405941	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62405942	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs62405943	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62405945	0.83[AMR][1000 genomes]
rs62405948	0.85[AFR][1000 genomes];0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs62405949	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62405953	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62405955	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62407561	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62407565	0.83[AMR][1000 genomes]
rs62407569	0.80[AMR][1000 genomes]
rs6929165	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7751338	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7755821	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7761268	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7761464	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7765263	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7765393	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7775770	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7775914	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7776058	0.84[AMR][1000 genomes]
rs7776246	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9296093	0.81[AMR][1000 genomes]
rs9296094	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9461875	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9461876	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9461877	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9461878	0.84[AFR][1000 genomes]
rs9461879	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9461880	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9461881	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9461882	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9461884	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs9461885	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9469486	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9469487	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9469488	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9469491	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9469492	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9469495	0.85[AFR][1000 genomes];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9469497	0.85[AFR][1000 genomes]
rs9469498	0.81[EUR][1000 genomes]
rs9469499	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9469500	0.81[EUR][1000 genomes]
rs9469503	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9469504	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9469505	0.81[AMR][1000 genomes]
rs9469506	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9469513	0.80[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv602832	chr6:33382241-33520221	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	esv2763548	chr6:33496201-33524779	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:33514000-33519800	Enhancers	Placenta	Placenta
2	chr6:33514600-33516200	Enhancers	Fetal Thymus	thymus
3	chr6:33514600-33516800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
4	chr6:33514800-33516200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
5	chr6:33515000-33516600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
6	chr6:33515000-33516600	Enhancers	Primary T helper cells fromperipheralblood	blood
7	chr6:33515000-33516800	Enhancers	Primary T cells fromperipheralblood	blood
8	chr6:33515200-33516600	Enhancers	Primary T cells from cord blood	blood
9	chr6:33515200-33516600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
10	chr6:33515200-33516600	Enhancers	Primary T helper naive cells from peripheral blood	blood
11	chr6:33515200-33516600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
12	chr6:33515200-33516600	Enhancers	Primary T helper cells PMA-I stimulated	--
13	chr6:33515200-33516600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
14	chr6:33515200-33516600	Enhancers	Primary T killer memory cells from peripheral blood	blood
15	chr6:33515200-33516800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr6:33515200-33517000	Enhancers	Primary hematopoietic stem cells	blood
17	chr6:33515400-33516400	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
18	chr6:33515400-33516600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
19	chr6:33515400-33516600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
20	chr6:33515400-33516800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr6:33515400-33517200	Enhancers	Primary hematopoietic stem cells short term culture	blood
22	chr6:33515600-33516200	Enhancers	Primary monocytes fromperipheralblood	blood
23	chr6:33515600-33516200	Enhancers	Primary B cells from peripheral blood	blood
24	chr6:33515600-33516400	Weak transcription	HUES6 Cell Line	embryonic stem cell
25	chr6:33515600-33517000	Weak transcription	K562	blood
26	chr6:33515800-33517200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr6:33516000-33517200	Enhancers	Primary neutrophils fromperipheralblood	blood
28	chr6:33516000-33523800	Weak transcription	GM12878-XiMat	blood

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