Variant report

Variant	rs2107738
Chromosome Location	chr7:83707697-83707698
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10268747	0.82[AMR][1000 genomes]
rs2527038	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2691694	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28837154	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv888627	chr7:83659577-83708238	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv888628	chr7:83659577-83722691	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv508464	chr7:83698939-83714150	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:83689800-83714400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr7:83690600-83714600	Weak transcription	NHDF-Ad	bronchial
3	chr7:83692200-83714600	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr7:83698400-83708200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr7:83698600-83710400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr7:83698600-83715400	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr7:83703200-83715200	Weak transcription	NH-A	brain
8	chr7:83703600-83714400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr7:83703600-83715400	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr7:83703800-83714400	Weak transcription	Colon Smooth Muscle	Colon
11	chr7:83706000-83711200	Weak transcription	Dnd41	blood
12	chr7:83706200-83707800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
13	chr7:83707400-83721600	Weak transcription	Fetal Brain Male	brain
14	chr7:83707600-83708000	Enhancers	HUES48 Cell Line	embryonic stem cell
15	chr7:83707600-83708000	Enhancers	iPS-20b Cell Line	embryonic stem cell
16	chr7:83707600-83708400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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