Variant report

Variant	rs2108106
Chromosome Location	chr22:32165032-32165033
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr22:32148657..32151429-chr22:32161601..32165600,4	MCF-7	breast:
2	22:32162110-32166713..22:33208968-33216036	Hela-S3	cervix:
3	22:31936958-31958600..22:32162110-32166713	GM12878	blood:
4	22:31829733-31836635..22:32162110-32166713	GM12878	blood:
5	22:31976153-31978142..22:32162110-32166713	Hela-S3	cervix:
6	22:32150875-32154575..22:32162110-32166713	GM12878	blood:
7	22:32162110-32166713..22:32284948-32287956	GM12878	blood:

Variant related genes	Relation type
ENSG00000184708	Chromatin interaction
ENSG00000198089	Chromatin interaction
ENSG00000100150	Chromatin interaction
ENSG00000197047	Chromatin interaction
ENSG00000227813	Chromatin interaction
ENSG00000214093	Chromatin interaction
ENSG00000242251	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10483161	0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11089523	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11089525	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11089528	0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs12165680	0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12165705	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12166823	0.81[EUR][1000 genomes]
rs17761473	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17761491	0.84[ASN][1000 genomes]
rs2108107	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5994426	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs5998118	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9619229	0.84[ASN][1000 genomes]
rs9621305	0.81[EUR][1000 genomes]
rs9621326	0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9621330	0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9621331	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9621345	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1060929	chr22:32102701-32176860	Flanking Active TSS Strong transcription Active TSS Weak transcription Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:32150400-32174200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr22:32150600-32172600	Weak transcription	Small Intestine	intestine
3	chr22:32150800-32212800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr22:32151000-32174400	Weak transcription	Psoas Muscle	Psoas
5	chr22:32151000-32210800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr22:32151200-32174800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr22:32151200-32181000	Weak transcription	NHDF-Ad	bronchial
8	chr22:32151400-32217400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr22:32151600-32170600	Weak transcription	HUVEC	blood vessel
10	chr22:32151600-32178200	Weak transcription	Stomach Mucosa	stomach
11	chr22:32151800-32173800	Weak transcription	HepG2	liver
12	chr22:32152200-32184000	Strong transcription	Monocytes-CD14+_RO01746	blood
13	chr22:32152400-32167600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr22:32152400-32187000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr22:32153000-32166400	Strong transcription	Primary T cells from cord blood	blood
16	chr22:32153000-32181600	Strong transcription	Primary monocytes fromperipheralblood	blood
17	chr22:32153200-32168800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr22:32153400-32187000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr22:32153800-32183800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
20	chr22:32154000-32170800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
21	chr22:32154000-32182000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
22	chr22:32154000-32188600	Strong transcription	Fetal Muscle Trunk	muscle
23	chr22:32154200-32170000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr22:32154200-32170800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
25	chr22:32154200-32171000	Strong transcription	Primary T cells fromperipheralblood	blood
26	chr22:32154200-32180600	Strong transcription	Fetal Stomach	stomach
27	chr22:32154200-32184000	Strong transcription	Liver	Liver
28	chr22:32154400-32188200	Strong transcription	Primary neutrophils fromperipheralblood	blood
29	chr22:32156200-32166200	Strong transcription	Stomach Smooth Muscle	stomach
30	chr22:32156200-32170000	Strong transcription	Primary T helper cells fromperipheralblood	blood
31	chr22:32156200-32182200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr22:32156400-32168600	Strong transcription	Primary T helper cells PMA-I stimulated	--
33	chr22:32156400-32184000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
34	chr22:32156600-32167000	Strong transcription	Adipose Nuclei	Adipose
35	chr22:32156800-32172400	Weak transcription	Muscle Satellite Cultured Cells	--
36	chr22:32158400-32172000	Weak transcription	Fetal Brain Male	brain
37	chr22:32159000-32177000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
38	chr22:32159200-32168600	Strong transcription	Brain Anterior Caudate	brain
39	chr22:32159200-32169000	Strong transcription	Duodenum Mucosa	Duodenum
40	chr22:32159200-32171200	Strong transcription	Placenta	Placenta
41	chr22:32159200-32179600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
42	chr22:32159400-32184200	Strong transcription	Primary B cells from peripheral blood	blood
43	chr22:32159600-32186600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
44	chr22:32159600-32207600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
45	chr22:32159800-32166200	Strong transcription	Primary B cells from cord blood	blood
46	chr22:32160200-32165800	Strong transcription	HUES64 Cell Line	embryonic stem cell
47	chr22:32160400-32166200	Strong transcription	Ovary	ovary
48	chr22:32160600-32167000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
49	chr22:32160600-32167200	Strong transcription	Colonic Mucosa	Colon
50	chr22:32160800-32166000	Strong transcription	iPS-18 Cell Line	embryonic stem cell

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