Variant report

Variant	rs9621345
Chromosome Location	chr22:32224804-32224805
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	22:32215168-32228866..22:32342898-32343477	K562	blood:
2	chr22:32218499..32222898-chr22:32223003..32225182,4	K562	blood:
3	chr22:32223442..32224992-chr22:32348903..32351731,2	K562	blood:
4	chr22:32222573..32225055-chr22:32338760..32340683,2	K562	blood:
5	chr22:32224047..32226678-chr22:32241465..32243996,2	K562	blood:

Variant related genes	Relation type
ENSG00000238910	Chromatin interaction
ENSG00000100150	Chromatin interaction
ENSG00000128245	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10483161	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11089523	0.87[ASN][1000 genomes]
rs11089525	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11089528	0.94[ASN][1000 genomes]
rs12165680	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12165705	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12166823	1.00[ASW][hapmap];0.90[CEU][hapmap];0.92[CHB][hapmap];0.91[CHD][hapmap];0.96[GIH][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap];0.81[ASN][1000 genomes]
rs16989573	0.88[GIH][hapmap];1.00[LWK][hapmap]
rs17761473	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17761491	1.00[ASW][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs2097390	1.00[LWK][hapmap]
rs2108106	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2108107	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs5753766	0.91[CEU][hapmap]
rs5994426	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs5998118	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9306268	1.00[ASW][hapmap];0.92[CHB][hapmap];0.95[CHD][hapmap];1.00[MEX][hapmap]
rs9619229	0.86[ASN][1000 genomes]
rs9621305	1.00[ASW][hapmap];0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap];0.81[ASN][1000 genomes]
rs9621312	0.81[ASN][1000 genomes]
rs9621326	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9621330	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9621331	1.00[CEU][hapmap];0.92[CHB][hapmap];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:32172200-32254400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr22:32188800-32259600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr22:32189800-32225200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr22:32192400-32242200	Strong transcription	Primary monocytes fromperipheralblood	blood
5	chr22:32192400-32251000	Strong transcription	Primary T helper cells fromperipheralblood	blood
6	chr22:32192400-32266600	Strong transcription	Monocytes-CD14+_RO01746	blood
7	chr22:32193000-32250600	Strong transcription	Primary T cells fromperipheralblood	blood
8	chr22:32193200-32226800	Strong transcription	Fetal Muscle Trunk	muscle
9	chr22:32193200-32228400	Strong transcription	Adipose Nuclei	Adipose
10	chr22:32193200-32246000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
11	chr22:32193200-32250600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr22:32197200-32251000	Strong transcription	Primary B cells from cord blood	blood
13	chr22:32204800-32225800	Strong transcription	Duodenum Smooth Muscle	Duodenum
14	chr22:32205000-32228200	Strong transcription	Fetal Muscle Leg	muscle
15	chr22:32205000-32228600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
16	chr22:32205200-32225200	Strong transcription	Primary T helper cells PMA-I stimulated	--
17	chr22:32205200-32226600	Strong transcription	Fetal Thymus	thymus
18	chr22:32205200-32257600	Strong transcription	Primary neutrophils fromperipheralblood	blood
19	chr22:32206400-32225600	Strong transcription	Left Ventricle	heart
20	chr22:32207800-32244000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr22:32209000-32245800	Strong transcription	Primary T cells from cord blood	blood
22	chr22:32209000-32254600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
23	chr22:32209200-32226600	Strong transcription	Sigmoid Colon	Sigmoid Colon
24	chr22:32209400-32225600	Weak transcription	Stomach Mucosa	stomach
25	chr22:32210200-32225200	Strong transcription	Rectal Mucosa Donor 29	rectum
26	chr22:32210200-32226000	Strong transcription	Stomach Smooth Muscle	stomach
27	chr22:32210400-32225200	Strong transcription	HUES48 Cell Line	embryonic stem cell
28	chr22:32210600-32251000	Strong transcription	Fetal Stomach	stomach
29	chr22:32211000-32226200	Strong transcription	Thymus	Thymus
30	chr22:32211400-32226800	Strong transcription	Duodenum Mucosa	Duodenum
31	chr22:32212000-32225600	Strong transcription	Liver	Liver
32	chr22:32212000-32226800	Strong transcription	Fetal Intestine Small	intestine
33	chr22:32212000-32228200	Strong transcription	Fetal Intestine Large	intestine
34	chr22:32216000-32239200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
35	chr22:32218200-32242200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
36	chr22:32218600-32241200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
37	chr22:32218800-32225600	Weak transcription	NH-A	brain
38	chr22:32218800-32241000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr22:32218800-32247200	Weak transcription	Psoas Muscle	Psoas
40	chr22:32219000-32227000	Weak transcription	Pancreatic Islets	Pancreatic Islet
41	chr22:32219000-32240200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
42	chr22:32219200-32225600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
43	chr22:32219200-32225600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
44	chr22:32219200-32225600	Weak transcription	K562	blood
45	chr22:32219200-32225800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
46	chr22:32219200-32225800	Weak transcription	Placenta Amnion	Placenta Amnion
47	chr22:32219200-32231800	Weak transcription	Colonic Mucosa	Colon
48	chr22:32219200-32232000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
49	chr22:32219200-32243800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
50	chr22:32219400-32226000	Weak transcription	Right Ventricle	heart

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