Variant report

Variant	rs16989573
Chromosome Location	chr22:32255802-32255803
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:15)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:15 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	22:32255158-32261719..22:32292186-32294405	GM12878	blood:
2	22:32255158-32261719..22:33339333-33353583	GM12878	blood:
3	22:31864703-31891033..22:32255158-32261719	K562	blood:
4	22:32162110-32166713..22:32255158-32261719	GM12878	blood:
5	22:31803954-31807204..22:32255158-32261719	GM12878	blood:
6	22:32053085-32061138..22:32255158-32261719	GM12878	blood:
7	22:32170492-32188129..22:32255158-32261719	GM12878	blood:
8	22:32255158-32261719..22:32802848-32805157	GM12878	blood:
9	22:31836635-31847259..22:32255158-32261719	K562	blood:
10	22:32012966-32043914..22:32255158-32261719	GM12878	blood:
11	22:32255158-32261719..22:32338420-32342898	H1-hESC	embryonic stem cell:	embryo
12	22:32255158-32261719..22:32342898-32343477	GM12878	blood:
13	22:32255158-32261719..22:32868055-32872511	GM12878	blood:
14	22:32102727-32109893..22:32255158-32261719	GM12878	blood:
15	22:32255158-32261719..22:32740683-32750950	K562	blood:

No data

Variant related genes	Relation type
ENSG00000100220	Chromatin interaction
ENSG00000128245	Chromatin interaction
ENSG00000128254	Chromatin interaction
ENSG00000241878	Chromatin interaction
ENSG00000184708	Chromatin interaction
ENSG00000183530	Chromatin interaction
ENSG00000199248	Chromatin interaction
ENSG00000100225	Chromatin interaction
ENSG00000198089	Chromatin interaction
ENSG00000185666	Chromatin interaction
ENSG00000128276	Chromatin interaction
ENSG00000100150	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10483161	0.88[GIH][hapmap];1.00[LWK][hapmap]
rs12166823	0.84[GIH][hapmap]
rs12167538	0.81[AFR][1000 genomes];0.80[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs12170536	1.00[CEU][hapmap];0.86[GIH][hapmap];0.89[EUR][1000 genomes]
rs17221119	1.00[JPT][hapmap]
rs17761473	0.88[GIH][hapmap];1.00[LWK][hapmap]
rs17761491	0.81[GIH][hapmap]
rs2097390	1.00[LWK][hapmap];1.00[MKK][hapmap]
rs2108107	0.88[GIH][hapmap];1.00[LWK][hapmap]
rs2157212	0.94[ASN][1000 genomes]
rs5994447	1.00[ASN][1000 genomes]
rs5998142	0.87[EUR][1000 genomes]
rs5998143	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs5998158	0.86[ASN][1000 genomes]
rs5998165	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs5998169	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62238930	0.81[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs62238935	0.90[ASN][1000 genomes]
rs743785	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9619237	1.00[ASN][1000 genomes]
rs9621345	0.88[GIH][hapmap];1.00[LWK][hapmap]
rs9621348	0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs9621351	0.90[ASN][1000 genomes]
rs9621357	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs9621361	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9621362	1.00[ASN][1000 genomes]
rs9621363	1.00[ASN][1000 genomes]

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:32188800-32259600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr22:32192400-32266600	Strong transcription	Monocytes-CD14+_RO01746	blood
3	chr22:32205200-32257600	Strong transcription	Primary neutrophils fromperipheralblood	blood
4	chr22:32226200-32263200	Weak transcription	Stomach Mucosa	stomach
5	chr22:32231400-32260400	Strong transcription	Liver	Liver
6	chr22:32238000-32258000	Strong transcription	Rectal Mucosa Donor 29	rectum
7	chr22:32241400-32263600	Weak transcription	HSMMtube	muscle
8	chr22:32242400-32313400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
9	chr22:32242800-32266400	Strong transcription	Primary monocytes fromperipheralblood	blood
10	chr22:32243000-32263000	Strong transcription	Primary B cells from peripheral blood	blood
11	chr22:32243200-32294200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
12	chr22:32243600-32266200	Weak transcription	A549	lung
13	chr22:32244000-32257400	Weak transcription	HMEC	breast
14	chr22:32244400-32266200	Weak transcription	HUVEC	blood vessel
15	chr22:32244400-32305400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
16	chr22:32244600-32263000	Weak transcription	H9 Cell Line	embryonic stem cell
17	chr22:32244600-32264200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr22:32244600-32266800	Weak transcription	Colon Smooth Muscle	Colon
19	chr22:32244600-32270200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
20	chr22:32244600-32303400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
21	chr22:32244800-32266600	Weak transcription	Osteobl	bone
22	chr22:32246800-32259000	Strong transcription	Primary T cells from cord blood	blood
23	chr22:32247000-32258000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
24	chr22:32247000-32282400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
25	chr22:32247600-32256000	Weak transcription	Fetal Heart	heart
26	chr22:32247600-32307400	Weak transcription	Hela-S3	cervix
27	chr22:32247800-32258600	Weak transcription	HSMM	muscle
28	chr22:32247800-32264800	Weak transcription	H1 Cell Line	embryonic stem cell
29	chr22:32247800-32270400	Weak transcription	Psoas Muscle	Psoas
30	chr22:32248000-32257400	Weak transcription	NHLF	lung
31	chr22:32249200-32289200	Weak transcription	HepG2	liver
32	chr22:32249400-32257200	Weak transcription	NHEK	skin
33	chr22:32249400-32259400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr22:32249600-32257400	Weak transcription	NH-A	brain
35	chr22:32250200-32259000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr22:32250400-32256000	Weak transcription	Brain Hippocampus Middle	brain
37	chr22:32250400-32256800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
38	chr22:32250400-32256800	Weak transcription	Gastric	stomach
39	chr22:32250400-32257200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
40	chr22:32250400-32261800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
41	chr22:32250600-32257400	Weak transcription	NHDF-Ad	bronchial
42	chr22:32250800-32266200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
43	chr22:32251400-32259400	Strong transcription	Primary T cells fromperipheralblood	blood
44	chr22:32252400-32256400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
45	chr22:32252400-32266600	Weak transcription	Rectal Smooth Muscle	rectum
46	chr22:32252600-32257800	Strong transcription	Stomach Smooth Muscle	stomach
47	chr22:32252800-32259200	Strong transcription	Primary B cells from cord blood	blood
48	chr22:32253400-32257200	Strong transcription	Fetal Lung	lung
49	chr22:32253400-32261800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr22:32253400-32275600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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