Variant report

Variant	rs62238930
Chromosome Location	chr22:32288524-32288525
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr22:32287695..32295635-chr22:32339159..32346051,14	K562	blood:
2	chr22:32287148..32289580-chr22:32339395..32341919,4	K562	blood:
3	chr22:32288125..32290719-chr22:32305985..32308107,2	K562	blood:

Variant related genes	Relation type
ENSG00000128245	Chromatin interaction
ENSG00000128254	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs12167538	1.00[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs16989573	0.81[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs2097390	0.83[AFR][1000 genomes]
rs2157212	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4820995	0.83[AFR][1000 genomes]
rs5994447	0.94[ASN][1000 genomes]
rs5998143	0.90[ASN][1000 genomes]
rs5998158	0.81[ASN][1000 genomes]
rs5998165	0.94[ASN][1000 genomes]
rs5998169	0.94[ASN][1000 genomes]
rs62238935	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7286575	0.92[EUR][1000 genomes]
rs737084	0.83[EUR][1000 genomes]
rs743785	0.81[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs9619237	0.94[ASN][1000 genomes]
rs9621348	0.88[ASN][1000 genomes]
rs9621351	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9621357	1.00[ASN][1000 genomes]
rs9621361	0.94[ASN][1000 genomes]
rs9621362	0.94[ASN][1000 genomes]
rs9621363	0.94[ASN][1000 genomes]

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:32242400-32313400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
2	chr22:32243200-32294200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chr22:32244400-32305400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
4	chr22:32244600-32303400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
5	chr22:32247600-32307400	Weak transcription	Hela-S3	cervix
6	chr22:32249200-32289200	Weak transcription	HepG2	liver
7	chr22:32254200-32293800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr22:32256800-32293400	Weak transcription	Fetal Brain Male	brain
9	chr22:32261600-32296200	Strong transcription	Liver	Liver
10	chr22:32262000-32289600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr22:32264200-32296000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
12	chr22:32265400-32293600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr22:32267000-32297400	Weak transcription	Fetal Heart	heart
14	chr22:32268000-32308000	Weak transcription	A549	lung
15	chr22:32271200-32291600	Weak transcription	Small Intestine	intestine
16	chr22:32271200-32303400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
17	chr22:32271400-32298400	Weak transcription	HSMMtube	muscle
18	chr22:32271600-32297400	Weak transcription	HSMM	muscle
19	chr22:32272600-32293600	Weak transcription	HUVEC	blood vessel
20	chr22:32272600-32298200	Weak transcription	NHLF	lung
21	chr22:32273000-32304000	Weak transcription	HMEC	breast
22	chr22:32274000-32295000	Strong transcription	Primary T helper cells fromperipheralblood	blood
23	chr22:32274000-32306600	Strong transcription	Primary B cells from peripheral blood	blood
24	chr22:32274400-32306600	Strong transcription	Primary monocytes fromperipheralblood	blood
25	chr22:32275000-32296200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
26	chr22:32275200-32296000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
27	chr22:32275600-32293200	Weak transcription	Psoas Muscle	Psoas
28	chr22:32275600-32295800	Strong transcription	Primary T cells from cord blood	blood
29	chr22:32276000-32289400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr22:32276000-32315200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
31	chr22:32276200-32289400	Weak transcription	Esophagus	oesophagus
32	chr22:32276200-32291200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
33	chr22:32276600-32293200	Weak transcription	Placenta Amnion	Placenta Amnion
34	chr22:32277600-32302400	Weak transcription	NHEK	skin
35	chr22:32279400-32297000	Weak transcription	Stomach Mucosa	stomach
36	chr22:32280400-32291200	Weak transcription	Left Ventricle	heart
37	chr22:32280400-32293400	Weak transcription	Right Ventricle	heart
38	chr22:32281000-32289600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr22:32281000-32314800	Weak transcription	Right Atrium	heart
40	chr22:32281200-32291400	Weak transcription	Rectal Smooth Muscle	rectum
41	chr22:32281200-32300800	Weak transcription	Colon Smooth Muscle	Colon
42	chr22:32281400-32289200	Weak transcription	Colonic Mucosa	Colon
43	chr22:32281400-32289600	Weak transcription	Aorta	Aorta
44	chr22:32281400-32289600	Weak transcription	Duodenum Smooth Muscle	Duodenum
45	chr22:32281400-32290000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
46	chr22:32281400-32291000	Weak transcription	Sigmoid Colon	Sigmoid Colon
47	chr22:32281400-32291600	Weak transcription	Brain Germinal Matrix	brain
48	chr22:32281400-32293000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
49	chr22:32281400-32301600	Weak transcription	Pancreas	Pancrea
50	chr22:32281600-32289600	Weak transcription	Gastric	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links