Variant report

Variant	rs5998143
Chromosome Location	chr22:32247002-32247003
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs12167538	0.94[ASN][1000 genomes]
rs12170536	0.89[EUR][1000 genomes]
rs16989573	0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2157212	0.90[ASN][1000 genomes]
rs5994447	0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs5998142	0.90[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs5998158	0.82[ASN][1000 genomes]
rs5998165	0.96[ASN][1000 genomes]
rs5998169	0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62238930	0.90[ASN][1000 genomes]
rs62238935	0.86[ASN][1000 genomes]
rs743785	0.96[ASN][1000 genomes]
rs9619237	0.85[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs9621348	0.98[ASN][1000 genomes]
rs9621351	0.94[ASN][1000 genomes]
rs9621357	0.90[ASN][1000 genomes]
rs9621361	0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9621362	0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9621363	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:32172200-32254400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr22:32188800-32259600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr22:32192400-32251000	Strong transcription	Primary T helper cells fromperipheralblood	blood
4	chr22:32192400-32266600	Strong transcription	Monocytes-CD14+_RO01746	blood
5	chr22:32193000-32250600	Strong transcription	Primary T cells fromperipheralblood	blood
6	chr22:32193200-32250600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr22:32197200-32251000	Strong transcription	Primary B cells from cord blood	blood
8	chr22:32205200-32257600	Strong transcription	Primary neutrophils fromperipheralblood	blood
9	chr22:32209000-32254600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
10	chr22:32210600-32251000	Strong transcription	Fetal Stomach	stomach
11	chr22:32218800-32247200	Weak transcription	Psoas Muscle	Psoas
12	chr22:32221400-32254600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
13	chr22:32226200-32263200	Weak transcription	Stomach Mucosa	stomach
14	chr22:32226600-32247800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr22:32227000-32254200	Strong transcription	Fetal Intestine Small	intestine
16	chr22:32227600-32254200	Strong transcription	Duodenum Mucosa	Duodenum
17	chr22:32229600-32254600	Strong transcription	Fetal Muscle Trunk	muscle
18	chr22:32229800-32250400	Strong transcription	Thymus	Thymus
19	chr22:32229800-32251000	Strong transcription	Fetal Muscle Leg	muscle
20	chr22:32229800-32253000	Strong transcription	Fetal Intestine Large	intestine
21	chr22:32230000-32248800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr22:32230600-32250800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
23	chr22:32231000-32250400	Strong transcription	Adipose Nuclei	Adipose
24	chr22:32231400-32251000	Strong transcription	Spleen	Spleen
25	chr22:32231400-32260400	Strong transcription	Liver	Liver
26	chr22:32231600-32248200	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr22:32231600-32248200	Strong transcription	Fetal Thymus	thymus
28	chr22:32232600-32247800	Strong transcription	Fetal Brain Female	brain
29	chr22:32236000-32255000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr22:32236400-32250400	Strong transcription	Esophagus	oesophagus
31	chr22:32236400-32250800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr22:32238000-32250800	Strong transcription	Stomach Smooth Muscle	stomach
33	chr22:32238000-32258000	Strong transcription	Rectal Mucosa Donor 29	rectum
34	chr22:32238600-32247800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr22:32238600-32250800	Strong transcription	Dnd41	blood
36	chr22:32239000-32248200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
37	chr22:32240200-32247200	Weak transcription	Hela-S3	cervix
38	chr22:32241400-32263600	Weak transcription	HSMMtube	muscle
39	chr22:32241800-32247200	Weak transcription	HSMM	muscle
40	chr22:32242000-32253600	Weak transcription	Fetal Kidney	kidney
41	chr22:32242400-32313400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
42	chr22:32242800-32266400	Strong transcription	Primary monocytes fromperipheralblood	blood
43	chr22:32243000-32247200	Weak transcription	HepG2	liver
44	chr22:32243000-32247800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr22:32243000-32247800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
46	chr22:32243000-32248800	Weak transcription	NH-A	brain
47	chr22:32243000-32248800	Weak transcription	NHDF-Ad	bronchial
48	chr22:32243000-32252800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr22:32243000-32263000	Strong transcription	Primary B cells from peripheral blood	blood
50	chr22:32243200-32247400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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