Variant report

Variant	rs12170536
Chromosome Location	chr22:32254057-32254058
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr22:32252167..32255555-chr22:32343100..32345854,4	K562	blood:
2	chr22:32250027..32255724-chr22:32338796..32342533,6	K562	blood:

Variant related genes	Relation type
ENSG00000128254	Chromatin interaction
ENSG00000128245	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs16989573	1.00[CEU][hapmap];0.86[GIH][hapmap];0.89[EUR][1000 genomes]
rs5994440	1.00[CHB][hapmap];0.90[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs5994448	1.00[ASN][1000 genomes]
rs5998142	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs5998143	0.89[EUR][1000 genomes]
rs5998165	1.00[CEU][hapmap]
rs7286575	0.95[ASN][1000 genomes]
rs737084	1.00[CHB][hapmap];0.90[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs743785	0.88[CEU][hapmap]

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:32172200-32254400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr22:32188800-32259600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr22:32192400-32266600	Strong transcription	Monocytes-CD14+_RO01746	blood
4	chr22:32205200-32257600	Strong transcription	Primary neutrophils fromperipheralblood	blood
5	chr22:32209000-32254600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
6	chr22:32221400-32254600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
7	chr22:32226200-32263200	Weak transcription	Stomach Mucosa	stomach
8	chr22:32227000-32254200	Strong transcription	Fetal Intestine Small	intestine
9	chr22:32227600-32254200	Strong transcription	Duodenum Mucosa	Duodenum
10	chr22:32229600-32254600	Strong transcription	Fetal Muscle Trunk	muscle
11	chr22:32231400-32260400	Strong transcription	Liver	Liver
12	chr22:32236000-32255000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr22:32238000-32258000	Strong transcription	Rectal Mucosa Donor 29	rectum
14	chr22:32241400-32263600	Weak transcription	HSMMtube	muscle
15	chr22:32242400-32313400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
16	chr22:32242800-32266400	Strong transcription	Primary monocytes fromperipheralblood	blood
17	chr22:32243000-32263000	Strong transcription	Primary B cells from peripheral blood	blood
18	chr22:32243200-32294200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
19	chr22:32243600-32266200	Weak transcription	A549	lung
20	chr22:32244000-32257400	Weak transcription	HMEC	breast
21	chr22:32244400-32266200	Weak transcription	HUVEC	blood vessel
22	chr22:32244400-32305400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
23	chr22:32244600-32263000	Weak transcription	H9 Cell Line	embryonic stem cell
24	chr22:32244600-32264200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr22:32244600-32266800	Weak transcription	Colon Smooth Muscle	Colon
26	chr22:32244600-32270200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
27	chr22:32244600-32303400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
28	chr22:32244800-32266600	Weak transcription	Osteobl	bone
29	chr22:32246800-32259000	Strong transcription	Primary T cells from cord blood	blood
30	chr22:32247000-32254200	Strong transcription	Sigmoid Colon	Sigmoid Colon
31	chr22:32247000-32258000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
32	chr22:32247000-32282400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
33	chr22:32247600-32256000	Weak transcription	Fetal Heart	heart
34	chr22:32247600-32307400	Weak transcription	Hela-S3	cervix
35	chr22:32247800-32255800	Weak transcription	HUES48 Cell Line	embryonic stem cell
36	chr22:32247800-32255800	Weak transcription	Brain Cingulate Gyrus	brain
37	chr22:32247800-32258600	Weak transcription	HSMM	muscle
38	chr22:32247800-32264800	Weak transcription	H1 Cell Line	embryonic stem cell
39	chr22:32247800-32270400	Weak transcription	Psoas Muscle	Psoas
40	chr22:32248000-32257400	Weak transcription	NHLF	lung
41	chr22:32249200-32289200	Weak transcription	HepG2	liver
42	chr22:32249400-32254200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
43	chr22:32249400-32257200	Weak transcription	NHEK	skin
44	chr22:32249400-32259400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
45	chr22:32249600-32257400	Weak transcription	NH-A	brain
46	chr22:32250200-32259000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
47	chr22:32250400-32255600	Weak transcription	Colonic Mucosa	Colon
48	chr22:32250400-32255600	Weak transcription	Esophagus	oesophagus
49	chr22:32250400-32255800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
50	chr22:32250400-32256000	Weak transcription	Brain Hippocampus Middle	brain

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