Variant report

Variant	rs5998165
Chromosome Location	chr22:32296000-32296001
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	22:31836635-31847259..22:32294405-32304383	Hela-S3	cervix:
2	22:32170492-32188129..22:32294405-32304383	Hela-S3	cervix:
3	22:32162110-32166713..22:32294405-32304383	H1-hESC	embryonic stem cell:	embryo
4	22:32102727-32109893..22:32294405-32304383	Hela-S3	cervix:
5	chr22:32295951..32297894-chr22:32305231..32307737,2	K562	blood:
6	22:31864703-31891033..22:32294405-32304383	K562	blood:
7	22:32294405-32304383..22:33262063-33266567	Hela-S3	cervix:
8	22:32294405-32304383..22:32868055-32872511	Hela-S3	cervix:
9	22:32053085-32061138..22:32294405-32304383	K562	blood:
10	22:32012966-32043914..22:32294405-32304383	Hela-S3	cervix:

No data

Variant related genes	Relation type
ENSG00000185666	Chromatin interaction
ENSG00000199248	Chromatin interaction
ENSG00000198089	Chromatin interaction
ENSG00000241878	Chromatin interaction
ENSG00000100225	Chromatin interaction
ENSG00000100150	Chromatin interaction
ENSG00000184708	Chromatin interaction
ENSG00000183530	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs12167538	0.98[ASN][1000 genomes]
rs12170536	1.00[CEU][hapmap]
rs16989573	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17221119	1.00[JPT][hapmap]
rs2157212	0.94[ASN][1000 genomes]
rs5994447	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs5994448	0.87[AFR][1000 genomes]
rs5998143	0.96[ASN][1000 genomes]
rs5998158	0.86[ASN][1000 genomes]
rs5998169	0.97[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs62238930	0.94[ASN][1000 genomes]
rs62238935	0.90[ASN][1000 genomes]
rs737084	0.87[ASW][hapmap];0.81[LWK][hapmap];0.80[AFR][1000 genomes]
rs743785	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9619237	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9621348	0.94[ASN][1000 genomes]
rs9621351	0.90[ASN][1000 genomes]
rs9621357	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs9621361	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9621362	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9621363	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:147 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:32242400-32313400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
2	chr22:32244400-32305400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
3	chr22:32244600-32303400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
4	chr22:32247600-32307400	Weak transcription	Hela-S3	cervix
5	chr22:32261600-32296200	Strong transcription	Liver	Liver
6	chr22:32264200-32296000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
7	chr22:32267000-32297400	Weak transcription	Fetal Heart	heart
8	chr22:32268000-32308000	Weak transcription	A549	lung
9	chr22:32271200-32303400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
10	chr22:32271400-32298400	Weak transcription	HSMMtube	muscle
11	chr22:32271600-32297400	Weak transcription	HSMM	muscle
12	chr22:32272600-32298200	Weak transcription	NHLF	lung
13	chr22:32273000-32304000	Weak transcription	HMEC	breast
14	chr22:32274000-32306600	Strong transcription	Primary B cells from peripheral blood	blood
15	chr22:32274400-32306600	Strong transcription	Primary monocytes fromperipheralblood	blood
16	chr22:32275000-32296200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
17	chr22:32275200-32296000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
18	chr22:32276000-32315200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr22:32277600-32302400	Weak transcription	NHEK	skin
20	chr22:32279400-32297000	Weak transcription	Stomach Mucosa	stomach
21	chr22:32281000-32314800	Weak transcription	Right Atrium	heart
22	chr22:32281200-32300800	Weak transcription	Colon Smooth Muscle	Colon
23	chr22:32281400-32301600	Weak transcription	Pancreas	Pancrea
24	chr22:32283400-32296000	Strong transcription	Monocytes-CD14+_RO01746	blood
25	chr22:32283600-32296000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
26	chr22:32284000-32302200	Strong transcription	Fetal Muscle Trunk	muscle
27	chr22:32287800-32302000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
28	chr22:32288000-32298600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr22:32288000-32303400	Weak transcription	HUES64 Cell Line	embryonic stem cell
30	chr22:32288000-32307800	Weak transcription	NH-A	brain
31	chr22:32288200-32308800	Weak transcription	Pancreatic Islets	Pancreatic Islet
32	chr22:32289000-32296000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
33	chr22:32289200-32299200	Strong transcription	Lung	lung
34	chr22:32289600-32296000	Strong transcription	Duodenum Smooth Muscle	Duodenum
35	chr22:32289800-32298400	Weak transcription	Gastric	stomach
36	chr22:32290200-32296000	Strong transcription	Fetal Muscle Leg	muscle
37	chr22:32290200-32297600	Weak transcription	Colonic Mucosa	Colon
38	chr22:32290200-32298400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
39	chr22:32290200-32298600	Weak transcription	Esophagus	oesophagus
40	chr22:32291200-32296000	Strong transcription	Spleen	Spleen
41	chr22:32291200-32296200	Strong transcription	Thymus	Thymus
42	chr22:32291400-32296000	Strong transcription	Primary neutrophils fromperipheralblood	blood
43	chr22:32291400-32308200	Strong transcription	Fetal Stomach	stomach
44	chr22:32292200-32297400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
45	chr22:32292200-32307400	Weak transcription	Osteobl	bone
46	chr22:32292600-32296000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
47	chr22:32293000-32296000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
48	chr22:32293200-32296000	Enhancers	Brain Cingulate Gyrus	brain
49	chr22:32293400-32296400	Enhancers	Fetal Brain Male	brain
50	chr22:32293400-32297000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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