Variant report

Variant	rs210890
Chromosome Location	chr6:11740036-11740037
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:11733831..11736245-chr6:11739870..11742383,2	K562	blood:

Variant related genes	Relation type
ENSG00000111863	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs191921	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs210899	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs210905	1.00[GIH][hapmap];0.88[MEX][hapmap];0.89[MKK][hapmap];0.87[TSI][hapmap];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs210910	1.00[GIH][hapmap];0.88[MEX][hapmap];0.84[TSI][hapmap];0.82[EUR][1000 genomes]
rs210911	0.82[EUR][1000 genomes]
rs210913	1.00[GIH][hapmap];0.88[MEX][hapmap];0.84[TSI][hapmap];0.81[EUR][1000 genomes]
rs210914	1.00[GIH][hapmap];0.84[TSI][hapmap];0.81[EUR][1000 genomes]
rs210926	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap];1.00[TSI][hapmap];0.85[YRI][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs210931	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs210933	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2235397	0.81[CEU][hapmap]
rs2743953	1.00[CEU][hapmap];0.85[YRI][hapmap];0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2781127	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4713852	0.85[CEU][hapmap];0.83[TSI][hapmap];0.81[EUR][1000 genomes]
rs6457810	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9394295	0.85[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758036	chr6:11679753-11822351	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv2759407	chr6:11679753-11822351	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv428470	chr6:11686198-11747850	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs210890	C6orf105	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11719400-11762200	Weak transcription	Colonic Mucosa	Colon
2	chr6:11723600-11744200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr6:11725200-11748600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr6:11726400-11744600	Weak transcription	Right Atrium	heart
5	chr6:11732400-11744800	Weak transcription	Fetal Intestine Small	intestine
6	chr6:11732400-11750400	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr6:11732800-11750400	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr6:11733000-11741400	Weak transcription	HSMM	muscle
9	chr6:11734600-11745000	Weak transcription	HSMMtube	muscle
10	chr6:11735200-11744600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr6:11735600-11743200	Weak transcription	Duodenum Mucosa	Duodenum
12	chr6:11735600-11754800	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr6:11736000-11741000	Weak transcription	GM12878-XiMat	blood
14	chr6:11736200-11744600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr6:11736200-11752400	Weak transcription	NHEK	skin
16	chr6:11736200-11754800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr6:11736600-11750600	Weak transcription	Stomach Mucosa	stomach
18	chr6:11737600-11744800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr6:11738000-11743200	Weak transcription	Ovary	ovary
20	chr6:11738000-11743800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
21	chr6:11738600-11762000	Weak transcription	Gastric	stomach
22	chr6:11738800-11743600	Weak transcription	Pancreas	Pancrea
23	chr6:11739000-11742400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr6:11739000-11755000	Weak transcription	HMEC	breast
25	chr6:11739200-11744600	Weak transcription	Adipose Nuclei	Adipose
26	chr6:11739400-11741000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr6:11739600-11743000	Weak transcription	Small Intestine	intestine
28	chr6:11739600-11751800	Weak transcription	HUVEC	blood vessel
29	chr6:11739800-11740400	Enhancers	K562	blood

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