Variant report

Variant	rs210926
Chromosome Location	chr6:11745565-11745566
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:11743683..11746205-chr6:11753336..11755527,2	K562	blood:
2	chr6:11745145..11747837-chr6:11750791..11752714,2	K562	blood:
3	chr6:11743986..11745912-chr6:11747510..11751154,3	MCF-7	breast:

Extended variants
information (count: 19 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs191921	0.87[EUR][1000 genomes]
rs210890	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap];1.00[TSI][hapmap];0.85[YRI][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs210899	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs210905	1.00[GIH][hapmap];0.88[MEX][hapmap];0.87[TSI][hapmap];0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs210910	1.00[GIH][hapmap];0.88[MEX][hapmap];0.84[TSI][hapmap];0.81[EUR][1000 genomes]
rs210911	0.81[EUR][1000 genomes]
rs210913	1.00[GIH][hapmap];0.88[MEX][hapmap];0.84[TSI][hapmap]
rs210914	1.00[GIH][hapmap];0.84[TSI][hapmap]
rs210931	1.00[CEU][hapmap];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs210933	1.00[CEU][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2235397	0.81[CEU][hapmap]
rs2743953	1.00[CEU][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2781127	1.00[CEU][hapmap];0.85[YRI][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4713852	0.85[CEU][hapmap];0.83[TSI][hapmap];0.81[EUR][1000 genomes]
rs6457810	1.00[CEU][hapmap];0.85[YRI][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9394295	0.85[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758036	chr6:11679753-11822351	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv2759407	chr6:11679753-11822351	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv428470	chr6:11686198-11747850	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs210926	C6orf105	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11719400-11762200	Weak transcription	Colonic Mucosa	Colon
2	chr6:11725200-11748600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr6:11732400-11750400	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr6:11732800-11750400	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr6:11735600-11754800	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr6:11736200-11752400	Weak transcription	NHEK	skin
7	chr6:11736200-11754800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr6:11736600-11750600	Weak transcription	Stomach Mucosa	stomach
9	chr6:11738600-11762000	Weak transcription	Gastric	stomach
10	chr6:11739000-11755000	Weak transcription	HMEC	breast
11	chr6:11739600-11751800	Weak transcription	HUVEC	blood vessel
12	chr6:11742000-11755000	Weak transcription	HSMM	muscle
13	chr6:11743800-11750200	Weak transcription	Small Intestine	intestine
14	chr6:11744200-11745600	Enhancers	Fetal Muscle Leg	muscle
15	chr6:11744400-11749000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr6:11744600-11745600	Enhancers	Skeletal Muscle Female	skeletal muscle
17	chr6:11744600-11745800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr6:11744600-11745800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr6:11744600-11745800	Enhancers	Adipose Nuclei	Adipose
20	chr6:11744600-11745800	Enhancers	Fetal Intestine Large	intestine
21	chr6:11744600-11745800	Enhancers	NHDF-Ad	bronchial
22	chr6:11744800-11745600	Enhancers	Cortex derived primary cultured neurospheres	brain
23	chr6:11744800-11745600	Enhancers	Colon Smooth Muscle	Colon
24	chr6:11744800-11745600	Enhancers	Fetal Heart	heart
25	chr6:11744800-11745600	Enhancers	Skeletal Muscle Male	skeletal muscle
26	chr6:11744800-11745800	Enhancers	Stomach Smooth Muscle	stomach
27	chr6:11744800-11754400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr6:11745000-11745600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr6:11745000-11745800	Enhancers	NHLF	lung
30	chr6:11745000-11746400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr6:11745000-11748600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
32	chr6:11745000-11748800	Weak transcription	Placenta	Placenta
33	chr6:11745200-11746800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
34	chr6:11745200-11749600	Weak transcription	Fetal Intestine Small	intestine
35	chr6:11745400-11745600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr6:11745400-11747000	Weak transcription	HSMMtube	muscle
37	chr6:11745400-11750200	Weak transcription	Duodenum Mucosa	Duodenum
38	chr6:11745400-11751200	Weak transcription	Pancreas	Pancrea
39	chr6:11745400-11752800	Weak transcription	Aorta	Aorta

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