Variant report

Variant	rs210929
Chromosome Location	chr6:11745122-11745123
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:11743683..11746205-chr6:11753336..11755527,2	K562	blood:
2	chr6:11743986..11745912-chr6:11747510..11751154,3	MCF-7	breast:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs169790	1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs172403	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs210891	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs210893	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs210900	1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs210907	1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs210909	1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs210912	1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs210916	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs210923	1.00[AFR][1000 genomes]
rs210927	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs210928	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs210932	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs210934	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2743952	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2743954	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs849011	1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758036	chr6:11679753-11822351	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv2759407	chr6:11679753-11822351	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv428470	chr6:11686198-11747850	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11719400-11762200	Weak transcription	Colonic Mucosa	Colon
2	chr6:11725200-11748600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr6:11732400-11750400	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr6:11732800-11750400	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr6:11735600-11754800	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr6:11736200-11752400	Weak transcription	NHEK	skin
7	chr6:11736200-11754800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr6:11736600-11750600	Weak transcription	Stomach Mucosa	stomach
9	chr6:11738600-11762000	Weak transcription	Gastric	stomach
10	chr6:11739000-11755000	Weak transcription	HMEC	breast
11	chr6:11739600-11751800	Weak transcription	HUVEC	blood vessel
12	chr6:11741600-11745400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
13	chr6:11742000-11755000	Weak transcription	HSMM	muscle
14	chr6:11743600-11745400	Enhancers	Pancreas	Pancrea
15	chr6:11743800-11745200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr6:11743800-11750200	Weak transcription	Small Intestine	intestine
17	chr6:11744200-11745600	Enhancers	Fetal Muscle Leg	muscle
18	chr6:11744400-11749000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr6:11744600-11745200	Enhancers	Fetal Thymus	thymus
20	chr6:11744600-11745200	Enhancers	Right Atrium	heart
21	chr6:11744600-11745400	Strong transcription	Duodenum Mucosa	Duodenum
22	chr6:11744600-11745600	Enhancers	Skeletal Muscle Female	skeletal muscle
23	chr6:11744600-11745800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr6:11744600-11745800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr6:11744600-11745800	Enhancers	Adipose Nuclei	Adipose
26	chr6:11744600-11745800	Enhancers	Fetal Intestine Large	intestine
27	chr6:11744600-11745800	Enhancers	NHDF-Ad	bronchial
28	chr6:11744800-11745200	Enhancers	Fetal Intestine Small	intestine
29	chr6:11744800-11745200	Enhancers	Rectal Smooth Muscle	rectum
30	chr6:11744800-11745400	Enhancers	Muscle Satellite Cultured Cells	--
31	chr6:11744800-11745400	Enhancers	Brain Substantia Nigra	brain
32	chr6:11744800-11745400	Enhancers	Ovary	ovary
33	chr6:11744800-11745600	Enhancers	Cortex derived primary cultured neurospheres	brain
34	chr6:11744800-11745600	Enhancers	Colon Smooth Muscle	Colon
35	chr6:11744800-11745600	Enhancers	Fetal Heart	heart
36	chr6:11744800-11745600	Enhancers	Skeletal Muscle Male	skeletal muscle
37	chr6:11744800-11745800	Enhancers	Stomach Smooth Muscle	stomach
38	chr6:11744800-11754400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
39	chr6:11745000-11745400	Enhancers	Aorta	Aorta
40	chr6:11745000-11745400	Enhancers	Fetal Lung	lung
41	chr6:11745000-11745400	Enhancers	HSMMtube	muscle
42	chr6:11745000-11745400	Enhancers	Osteobl	bone
43	chr6:11745000-11745600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr6:11745000-11745800	Enhancers	NHLF	lung
45	chr6:11745000-11746400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
46	chr6:11745000-11748600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
47	chr6:11745000-11748800	Weak transcription	Placenta	Placenta

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links