Variant report

Variant	rs210923
Chromosome Location	chr6:11709362-11709363
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:11707605..11709932-chr6:11714222..11716200,2	K562	blood:
2	chr6:11704392..11707213-chr6:11707810..11709507,2	K562	blood:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10485417	0.88[CHB][hapmap]
rs12110733	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1333942	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1413342	0.92[EUR][1000 genomes]
rs1547310	0.92[EUR][1000 genomes]
rs169790	1.00[AFR][1000 genomes]
rs172403	1.00[AFR][1000 genomes]
rs210891	1.00[AFR][1000 genomes]
rs210900	1.00[AFR][1000 genomes]
rs210907	1.00[AFR][1000 genomes]
rs210909	1.00[AFR][1000 genomes]
rs210912	1.00[AFR][1000 genomes]
rs210916	1.00[AFR][1000 genomes]
rs210927	1.00[AFR][1000 genomes]
rs210928	1.00[AFR][1000 genomes]
rs210929	1.00[AFR][1000 genomes]
rs210932	1.00[AFR][1000 genomes]
rs210934	1.00[AFR][1000 genomes]
rs2327459	0.88[CHB][hapmap];0.92[EUR][1000 genomes]
rs2743952	1.00[AFR][1000 genomes]
rs2876244	0.92[EUR][1000 genomes]
rs6911232	0.88[CHB][hapmap];0.82[JPT][hapmap];0.92[EUR][1000 genomes]
rs6913451	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6925918	0.92[EUR][1000 genomes]
rs6940702	0.88[CHB][hapmap];0.92[EUR][1000 genomes]
rs849011	1.00[AFR][1000 genomes]
rs9469853	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758036	chr6:11679753-11822351	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv2759407	chr6:11679753-11822351	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv428470	chr6:11686198-11747850	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11688800-11711000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr6:11701800-11713000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr6:11703200-11711200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr6:11703200-11711400	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr6:11703200-11711400	Weak transcription	HSMM	muscle
6	chr6:11703400-11710400	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr6:11703400-11710400	Weak transcription	Spleen	Spleen
8	chr6:11703600-11712600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr6:11703800-11711200	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr6:11704200-11714800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr6:11705400-11710400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
12	chr6:11705800-11712000	Weak transcription	Adipose Nuclei	Adipose
13	chr6:11706600-11712000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr6:11707200-11711600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr6:11708000-11710800	Enhancers	Fetal Muscle Leg	muscle
16	chr6:11708200-11710200	Weak transcription	Lung	lung
17	chr6:11708200-11714800	Enhancers	Primary T cells fromperipheralblood	blood
18	chr6:11708400-11710000	Enhancers	Primary T helper cells PMA-I stimulated	--
19	chr6:11708400-11710600	Weak transcription	Fetal Muscle Trunk	muscle
20	chr6:11708400-11716800	Enhancers	Primary T helper cells fromperipheralblood	blood
21	chr6:11709000-11710600	Enhancers	Primary T cells from cord blood	blood
22	chr6:11709000-11710600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
23	chr6:11709000-11711200	Weak transcription	Psoas Muscle	Psoas
24	chr6:11709000-11714800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
25	chr6:11709000-11715800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
26	chr6:11709000-11716400	Enhancers	Primary T helper naive cells from peripheral blood	blood
27	chr6:11709200-11710400	Weak transcription	HSMMtube	muscle
28	chr6:11709200-11710800	Enhancers	Primary T killer memory cells from peripheral blood	blood

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