Variant report

Variant	rs2327459
Chromosome Location	chr6:11700438-11700439
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1012511	1.00[YRI][hapmap]
rs1012512	1.00[YRI][hapmap]
rs10485417	1.00[CHB][hapmap];0.82[JPT][hapmap];0.84[ASN][1000 genomes]
rs12110733	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1333942	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1413342	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1547310	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs210923	0.88[CHB][hapmap];0.92[EUR][1000 genomes]
rs2876244	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6911232	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6913451	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6925918	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6940702	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9469797	0.93[ASN][1000 genomes]
rs9469839	0.97[ASN][1000 genomes]
rs9469853	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758036	chr6:11679753-11822351	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv2759407	chr6:11679753-11822351	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv428470	chr6:11686198-11747850	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11686600-11701400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:11686600-11702400	Weak transcription	HSMMtube	muscle
3	chr6:11688800-11711000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr6:11689800-11702000	Weak transcription	HSMM	muscle
5	chr6:11700000-11700600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr6:11700200-11700600	Enhancers	Primary T cells from cord blood	blood
7	chr6:11700200-11700600	Enhancers	A549	lung
8	chr6:11700200-11700600	Enhancers	GM12878-XiMat	blood
9	chr6:11700200-11701000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
10	chr6:11700200-11701000	Enhancers	Primary T killer memory cells from peripheral blood	blood
11	chr6:11700200-11701800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
12	chr6:11700200-11703400	Enhancers	NHEK	skin
13	chr6:11700400-11700600	Enhancers	Duodenum Mucosa	Duodenum
14	chr6:11700400-11701800	Enhancers	Primary T helper cells fromperipheralblood	blood
15	chr6:11700400-11702600	Enhancers	Primary T helper cells PMA-I stimulated	--

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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