Variant report

Variant	rs6913451
Chromosome Location	chr6:11702140-11702141
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10485417	0.87[ASN][1000 genomes]
rs12110733	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1333942	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1413342	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1547310	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs210923	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2327459	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2876244	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6911232	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6925918	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6940702	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9469797	0.90[ASN][1000 genomes]
rs9469839	0.90[ASN][1000 genomes]
rs9469853	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758036	chr6:11679753-11822351	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv2759407	chr6:11679753-11822351	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv428470	chr6:11686198-11747850	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11686600-11702400	Weak transcription	HSMMtube	muscle
2	chr6:11688800-11711000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr6:11700200-11703400	Enhancers	NHEK	skin
4	chr6:11700400-11702600	Enhancers	Primary T helper cells PMA-I stimulated	--
5	chr6:11700600-11702200	Weak transcription	Duodenum Mucosa	Duodenum
6	chr6:11700600-11702200	Weak transcription	A549	lung
7	chr6:11701000-11707200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
8	chr6:11701400-11702400	Enhancers	Hela-S3	cervix
9	chr6:11701400-11703600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr6:11701600-11703400	Enhancers	Esophagus	oesophagus
11	chr6:11701800-11702400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
12	chr6:11701800-11702800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr6:11701800-11703800	Enhancers	Stomach Mucosa	stomach
14	chr6:11701800-11708400	Weak transcription	Primary T helper cells fromperipheralblood	blood
15	chr6:11701800-11713000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr6:11702000-11703200	Enhancers	HSMM	muscle
17	chr6:11702000-11703400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr6:11702000-11703600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr6:11702000-11703800	Enhancers	GM12878-XiMat	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links