Variant report

Variant	rs12110733
Chromosome Location	chr6:11704319-11704320
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:11703791..11705962-chr6:11765278..11767531,2	K562	blood:

Variant related genes	Relation type
ENSG00000111863	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1012513	0.87[AFR][1000 genomes]
rs1333942	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1413342	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1547310	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs210923	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2327459	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2876244	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6911232	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6913451	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6925918	1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6940702	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9469797	0.82[ASN][1000 genomes]
rs9469839	0.82[ASN][1000 genomes]
rs9469853	1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758036	chr6:11679753-11822351	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv2759407	chr6:11679753-11822351	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv428470	chr6:11686198-11747850	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11688800-11711000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr6:11701000-11707200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
3	chr6:11701800-11708400	Weak transcription	Primary T helper cells fromperipheralblood	blood
4	chr6:11701800-11713000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr6:11702400-11704600	Enhancers	NHDF-Ad	bronchial
6	chr6:11702600-11705400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
7	chr6:11702600-11708400	Weak transcription	Primary T helper cells PMA-I stimulated	--
8	chr6:11702800-11708400	Weak transcription	HSMMtube	muscle
9	chr6:11703200-11705400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr6:11703200-11705600	Weak transcription	Primary monocytes fromperipheralblood	blood
11	chr6:11703200-11705600	Weak transcription	Adipose Nuclei	Adipose
12	chr6:11703200-11711200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr6:11703200-11711400	Weak transcription	Muscle Satellite Cultured Cells	--
14	chr6:11703200-11711400	Weak transcription	HSMM	muscle
15	chr6:11703400-11706600	Weak transcription	Lung	lung
16	chr6:11703400-11708000	Weak transcription	Fetal Muscle Leg	muscle
17	chr6:11703400-11710400	Weak transcription	Skeletal Muscle Female	skeletal muscle
18	chr6:11703400-11710400	Weak transcription	Spleen	Spleen
19	chr6:11703600-11704600	Enhancers	Hela-S3	cervix
20	chr6:11703600-11705200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr6:11703600-11712600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr6:11703800-11705200	Weak transcription	GM12878-XiMat	blood
23	chr6:11703800-11711200	Weak transcription	Rectal Mucosa Donor 31	rectum
24	chr6:11704200-11714800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links