Variant report

Variant	rs9469839
Chromosome Location	chr6:11683831-11683832
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10485417	1.00[CHB][hapmap];0.82[JPT][hapmap];0.87[ASN][1000 genomes]
rs1150577	1.00[EUR][1000 genomes]
rs12110733	0.82[ASN][1000 genomes]
rs1333942	0.90[ASN][1000 genomes]
rs1413342	0.97[ASN][1000 genomes]
rs1547310	0.97[ASN][1000 genomes]
rs210923	0.88[CHB][hapmap];0.82[JPT][hapmap]
rs2327459	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs2876244	0.97[ASN][1000 genomes]
rs6911232	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs6913451	0.90[ASN][1000 genomes]
rs6925918	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs6940702	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs9469769	0.89[EUR][1000 genomes]
rs9469797	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9469853	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758036	chr6:11679753-11822351	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv2759407	chr6:11679753-11822351	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11681600-11685000	Weak transcription	NHEK	skin
2	chr6:11681600-11687600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr6:11681800-11685000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr6:11682800-11685000	Weak transcription	HSMMtube	muscle
5	chr6:11683000-11685200	Weak transcription	Osteobl	bone
6	chr6:11683200-11685000	Weak transcription	HSMM	muscle
7	chr6:11683200-11685200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr6:11683400-11685200	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr6:11683600-11685000	Weak transcription	Hela-S3	cervix
10	chr6:11683800-11684600	Enhancers	Primary neutrophils fromperipheralblood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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