Variant report

Variant	rs2109853
Chromosome Location	chr2:210691028-210691029
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs4672559	0.97[ASN][1000 genomes]
rs59373555	0.96[ASN][1000 genomes]
rs6707679	0.97[ASN][1000 genomes]
rs7569393	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv3142	chr2:210660150-210705006	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
2	nsv431969	chr2:210682494-211074494	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:210680000-210706800	Weak transcription	Brain Hippocampus Middle	brain
2	chr2:210682000-210769600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr2:210683000-210696000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr2:210683600-210704000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr2:210683800-210704200	Weak transcription	Brain Germinal Matrix	brain
6	chr2:210685800-210708400	Weak transcription	Brain Cingulate Gyrus	brain
7	chr2:210686000-210697600	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr2:210686000-210698400	Weak transcription	Brain Anterior Caudate	brain
9	chr2:210686000-210720400	Weak transcription	Brain Angular Gyrus	brain
10	chr2:210686200-210704000	Weak transcription	Fetal Brain Female	brain
11	chr2:210686400-210694000	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr2:210686400-210695800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr2:210686400-210703800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr2:210686400-210705200	Weak transcription	Cortex derived primary cultured neurospheres	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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