Variant report

Variant	rs59373555
Chromosome Location	chr2:210668825-210668826
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Variant related genes	Relation type
ENSG00000178096	Chromatin interaction
ENSG00000184678	Chromatin interaction
ENSG00000184260	Chromatin interaction
ENSG00000184270	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11678044	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2098204	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2109853	0.96[ASN][1000 genomes]
rs4672559	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs57305145	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs57990979	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6707679	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7569393	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009129	chr2:210550858-210681136	Bivalent/Poised TSS Active TSS Weak transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv3142	chr2:210660150-210705006	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:210652200-210685000	Weak transcription	Brain Angular Gyrus	brain
2	chr2:210652400-210681000	Weak transcription	Brain Anterior Caudate	brain
3	chr2:210661200-210671000	Weak transcription	Brain Germinal Matrix	brain
4	chr2:210662600-210670800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr2:210665800-210681800	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr2:210666000-210671000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr2:210666400-210670800	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr2:210667600-210678200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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