Variant report

Variant	rs2112177
Chromosome Location	chr5:96403253-96403254
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10491387	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10515251	1.00[JPT][hapmap]
rs10515252	1.00[JPT][hapmap]
rs17082244	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17087112	1.00[JPT][hapmap]
rs17087114	1.00[JPT][hapmap]
rs17087268	1.00[ASN][1000 genomes]
rs17087269	1.00[ASN][1000 genomes]
rs17087272	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17087279	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17087310	1.00[ASN][1000 genomes]
rs17592545	1.00[ASN][1000 genomes]
rs2161109	1.00[ASN][1000 genomes]
rs4577715	1.00[JPT][hapmap]
rs6861666	1.00[JPT][hapmap]
rs73141176	1.00[ASN][1000 genomes]
rs73141190	1.00[ASN][1000 genomes]
rs769337	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7729859	1.00[ASN][1000 genomes]
rs7736145	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432755	chr5:95987984-96657483	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv598962	chr5:96057891-96893164	Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
3	nsv4924	chr5:96391451-96437233	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:96399600-96407400	Weak transcription	Fetal Kidney	kidney
2	chr5:96399800-96405800	Weak transcription	Fetal Muscle Leg	muscle
3	chr5:96402800-96403400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr5:96402800-96403400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
5	chr5:96403000-96403400	Enhancers	Brain Hippocampus Middle	brain
6	chr5:96403000-96403600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr5:96403000-96403600	Enhancers	Fetal Heart	heart
8	chr5:96403000-96403800	Enhancers	Fetal Lung	lung
9	chr5:96403000-96404000	Enhancers	Colon Smooth Muscle	Colon

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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