Variant report

Variant	rs73141176
Chromosome Location	chr5:96394151-96394152
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10491387	1.00[ASN][1000 genomes]
rs17082244	1.00[ASN][1000 genomes]
rs17087268	1.00[ASN][1000 genomes]
rs17087269	1.00[ASN][1000 genomes]
rs17087272	1.00[ASN][1000 genomes]
rs17087279	1.00[ASN][1000 genomes]
rs17087310	1.00[ASN][1000 genomes]
rs17592545	1.00[ASN][1000 genomes]
rs2112177	1.00[ASN][1000 genomes]
rs2161109	1.00[ASN][1000 genomes]
rs61387636	1.00[AFR][1000 genomes]
rs73141149	0.83[AFR][1000 genomes]
rs73141151	0.83[AFR][1000 genomes]
rs73141163	1.00[AFR][1000 genomes]
rs73141178	1.00[AFR][1000 genomes]
rs73141180	0.95[AFR][1000 genomes]
rs73141185	0.87[AFR][1000 genomes]
rs73141190	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73141196	0.83[AFR][1000 genomes]
rs73143103	0.83[AFR][1000 genomes]
rs769337	1.00[ASN][1000 genomes]
rs7729859	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432755	chr5:95987984-96657483	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv598962	chr5:96057891-96893164	Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
3	nsv4924	chr5:96391451-96437233	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:96386800-96397800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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