Variant report

Variant	rs73141151
Chromosome Location	chr5:96380040-96380041
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:96379639..96380449-chr5:96478074..96478981,3	K562	blood:
2	chr5:96379574..96380413-chr5:96477909..96479006,5	MCF-7	breast:
3	chr5:96379467..96380324-chr5:96497473..96498285,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000145721	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs61387636	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73141149	0.91[AFR][1000 genomes]
rs73141163	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73141176	0.83[AFR][1000 genomes]
rs73141178	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73141180	1.00[AMR][1000 genomes]
rs73141185	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432755	chr5:95987984-96657483	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv598962	chr5:96057891-96893164	Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
3	nsv949058	chr5:96082433-96390619	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:96364600-96383400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr5:96364800-96382000	Weak transcription	NH-A	brain
3	chr5:96364800-96383000	Weak transcription	HMEC	breast
4	chr5:96365800-96382000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr5:96369800-96381800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr5:96372800-96381400	Weak transcription	Placenta	Placenta
7	chr5:96372800-96382600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr5:96373200-96382000	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr5:96373600-96384600	Weak transcription	Primary monocytes fromperipheralblood	blood
10	chr5:96374000-96382000	Weak transcription	Dnd41	blood
11	chr5:96374600-96384600	Weak transcription	Monocytes-CD14+_RO01746	blood
12	chr5:96375000-96382000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr5:96377600-96380200	Enhancers	Fetal Muscle Leg	muscle
14	chr5:96378000-96380600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr5:96378400-96380200	Enhancers	Fetal Intestine Large	intestine
16	chr5:96378600-96380200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr5:96378600-96380400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr5:96378800-96380400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr5:96379000-96380200	Weak transcription	Gastric	stomach
20	chr5:96379000-96381200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr5:96379200-96380200	Enhancers	HUES6 Cell Line	embryonic stem cell
22	chr5:96379200-96380200	Enhancers	Left Ventricle	heart
23	chr5:96379200-96381400	Enhancers	Fetal Kidney	kidney
24	chr5:96379400-96380200	Enhancers	iPS-15b Cell Line	embryonic stem cell
25	chr5:96379400-96380200	Enhancers	HUVEC	blood vessel
26	chr5:96379400-96380400	Enhancers	iPS-20b Cell Line	embryonic stem cell
27	chr5:96379600-96380200	Enhancers	HUES48 Cell Line	embryonic stem cell
28	chr5:96379600-96381200	Enhancers	H1 Cell Line	embryonic stem cell
29	chr5:96379600-96382800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr5:96379800-96381800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
31	chr5:96380000-96380200	Enhancers	Right Ventricle	heart
32	chr5:96380000-96380400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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