Variant report

Variant	rs2116339
Chromosome Location	chr8:64349104-64349105
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10093298	0.86[ASN][1000 genomes]
rs10095044	0.86[ASN][1000 genomes]
rs10107912	0.95[ASN][1000 genomes]
rs10112423	0.86[ASN][1000 genomes]
rs1013259	0.86[ASN][1000 genomes]
rs10441558	0.84[ASN][1000 genomes]
rs10808732	0.94[ASN][1000 genomes]
rs10957285	0.86[ASN][1000 genomes]
rs11775060	0.91[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs11777936	0.91[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs11779425	0.87[JPT][hapmap];0.86[ASN][1000 genomes]
rs11782289	0.86[ASN][1000 genomes]
rs11783042	0.87[JPT][hapmap];0.86[ASN][1000 genomes]
rs11783055	0.87[JPT][hapmap];0.86[ASN][1000 genomes]
rs11786252	0.87[JPT][hapmap];0.86[ASN][1000 genomes]
rs12545091	0.85[CHD][hapmap];0.87[JPT][hapmap];0.86[ASN][1000 genomes]
rs12549069	0.86[ASN][1000 genomes]
rs12550189	0.84[ASN][1000 genomes]
rs13250116	0.86[ASN][1000 genomes]
rs13265562	0.87[JPT][hapmap];0.86[ASN][1000 genomes]
rs13267865	0.86[ASN][1000 genomes]
rs1431591	0.94[ASN][1000 genomes]
rs2354894	0.91[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs28877014	0.86[ASN][1000 genomes]
rs4737646	0.86[ASN][1000 genomes]
rs4739089	0.85[CHD][hapmap];0.87[JPT][hapmap];0.86[ASN][1000 genomes]
rs4739090	0.86[ASN][1000 genomes]
rs4739091	0.91[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs6472106	0.90[ASN][1000 genomes]
rs6987680	0.86[ASN][1000 genomes]
rs6994236	0.87[JPT][hapmap];0.86[ASN][1000 genomes]
rs7006972	0.86[ASN][1000 genomes]
rs7462242	0.96[ASN][1000 genomes]
rs7825481	0.94[ASN][1000 genomes]
rs7834350	0.91[CHB][hapmap];0.95[JPT][hapmap];0.94[ASN][1000 genomes]
rs7841852	0.85[CHD][hapmap];0.87[JPT][hapmap];0.86[ASN][1000 genomes]
rs9298077	0.85[CHD][hapmap];0.87[JPT][hapmap];0.86[ASN][1000 genomes]
rs974555	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv890967	chr8:64107847-64454446	Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:64348400-64349200	Enhancers	ES-I3 Cell Line	embryonic stem cell
2	chr8:64348600-64349600	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr8:64349000-64349400	Weak transcription	HUES6 Cell Line	embryonic stem cell

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