Variant report

Variant	rs974555
Chromosome Location	chr8:64360059-64360060
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10093298	0.83[AFR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10095044	0.84[AFR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10107912	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10112423	0.89[ASN][1000 genomes]
rs1013259	0.85[AFR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1030587	0.91[EUR][1000 genomes]
rs10441558	0.83[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs10808732	0.94[AFR][1000 genomes];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10957285	0.88[AFR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11775060	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11777936	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11779425	0.87[JPT][hapmap];0.92[YRI][hapmap];0.83[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs11782289	0.83[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs11783042	0.87[JPT][hapmap];0.92[YRI][hapmap];0.83[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs11783055	0.81[CHB][hapmap];0.87[JPT][hapmap];0.80[YRI][hapmap];0.89[ASN][1000 genomes]
rs11786252	0.87[JPT][hapmap];0.92[YRI][hapmap];0.83[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs12545091	0.88[ASW][hapmap];0.81[CEU][hapmap];0.93[CHD][hapmap];0.87[JPT][hapmap];0.93[LWK][hapmap];0.83[TSI][hapmap];0.92[YRI][hapmap];0.83[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs12549069	0.88[AFR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12550189	0.81[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs13250116	0.83[AFR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13265562	0.80[CEU][hapmap];0.82[CHB][hapmap];0.87[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13267865	0.88[AFR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1431591	0.94[AFR][1000 genomes];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2116339	0.95[ASN][1000 genomes]
rs2354894	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28877014	0.85[AFR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4737646	0.87[AFR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4739089	0.88[ASW][hapmap];0.81[CEU][hapmap];0.93[CHD][hapmap];0.83[GIH][hapmap];0.87[JPT][hapmap];0.95[LWK][hapmap];0.85[TSI][hapmap];0.92[YRI][hapmap];0.83[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs4739090	0.83[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs4739091	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6472106	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6987680	0.85[AFR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6994236	0.82[CHB][hapmap];0.87[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7006972	0.83[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs7462242	0.94[AFR][1000 genomes];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7825481	0.94[AFR][1000 genomes];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7834350	0.84[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7841852	0.88[ASW][hapmap];0.93[CHD][hapmap];0.83[GIH][hapmap];0.87[JPT][hapmap];0.95[LWK][hapmap];0.85[TSI][hapmap];0.92[YRI][hapmap];0.83[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs891691	0.83[EUR][1000 genomes]
rs9298077	0.88[ASW][hapmap];0.81[CEU][hapmap];0.93[CHD][hapmap];0.83[GIH][hapmap];0.87[JPT][hapmap];0.95[LWK][hapmap];0.85[TSI][hapmap];0.92[YRI][hapmap];0.83[AFR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv890967	chr8:64107847-64454446	Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:64359600-64360400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr8:64359600-64360800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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