Variant report

Variant	rs2118824
Chromosome Location	chr10:92738106-92738107
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 95 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:94)

rs_ID	r²[population]
rs1001845	0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs1001846	0.84[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs1072491	0.85[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs10736059	0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs10785977	0.85[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs10785978	0.85[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs10785979	0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs10785980	0.84[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs10785981	0.85[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs10881858	0.80[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs10881859	0.80[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs10881860	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10881861	0.85[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs10881864	0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs10881865	0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs10881866	0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs10881867	0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs10881870	0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs10881871	0.85[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs11186372	0.92[ASN][1000 genomes]
rs11186373	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11186383	0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs11186384	0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs11186385	0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs11186390	0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs11186398	0.85[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs11186399	0.85[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs11186408	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1122870	0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs11528048	0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs11594833	0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs11596841	0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs11812869	0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs11814844	0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs12219023	0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs12570633	0.85[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs12573344	0.85[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs12772494	0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs12778021	0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs12779258	0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs12780522	0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs1334579	0.84[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs1334580	0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs1334581	0.94[ASN][1000 genomes]
rs1334582	0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs1418815	0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs1544217	0.85[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs2027108	0.82[ASN][1000 genomes]
rs2118825	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2141375	0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs2420498	0.85[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs28849130	0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs2901176	0.81[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs3885867	0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs3885868	0.85[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs3981165	0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs4397747	0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs4411211	0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs4423105	0.85[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs4439428	0.80[AMR][1000 genomes]
rs4553280	0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs4639845	0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs4639846	0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs4933202	0.82[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs4933627	0.82[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs4933629	0.94[ASN][1000 genomes]
rs4933630	0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs4933632	0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs4933634	0.93[AFR][1000 genomes]
rs6583740	0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs6583741	0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs6583743	0.98[ASN][1000 genomes]
rs7067705	0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs7071167	0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs7071323	0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs7071533	0.84[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs7075411	0.84[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7079028	0.85[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs7083495	0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs7093432	0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs7095281	0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs7099297	0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs7099420	0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs7099671	0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs747334	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs747335	0.88[AFR][1000 genomes]
rs7895456	0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs7897141	0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs7897403	0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs7897603	0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs7897624	0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs7906208	0.84[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs7916859	0.86[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs7917623	0.80[AMR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831945	chr10:92590576-92793582	Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:92729200-92744400	Weak transcription	Psoas Muscle	Psoas
2	chr10:92733600-92743800	Weak transcription	Right Atrium	heart
3	chr10:92735400-92742400	Weak transcription	Left Ventricle	heart
4	chr10:92736400-92738400	Enhancers	Fetal Thymus	thymus
5	chr10:92737000-92739200	Enhancers	Thymus	Thymus
6	chr10:92737200-92739200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr10:92737200-92742400	Genic enhancers	Dnd41	blood
8	chr10:92737400-92743800	Weak transcription	Right Ventricle	heart
9	chr10:92737800-92739000	Bivalent Enhancer	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr10:92738000-92743400	Weak transcription	GM12878-XiMat	blood
11	chr10:92738000-92743600	Weak transcription	Primary B cells from peripheral blood	blood

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