Variant report

Variant	rs2901176
Chromosome Location	chr10:92743250-92743251
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-RPP30-2	chr10:92741634-92743478	NONHSAT015613

Extended variants
information (count: 96 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:95)

rs_ID	r²[population]
rs1001845	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1001846	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1072491	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10736059	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10785977	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10785978	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10785979	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10785980	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10785981	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10881858	0.88[ASN][1000 genomes]
rs10881859	0.88[ASN][1000 genomes]
rs10881860	0.92[ASN][1000 genomes]
rs10881861	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10881864	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10881865	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10881866	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10881867	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10881870	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10881871	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11186372	0.90[ASN][1000 genomes]
rs11186373	0.91[ASN][1000 genomes]
rs11186383	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11186384	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11186385	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11186390	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11186398	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11186399	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11186408	1.00[ASN][1000 genomes]
rs1122870	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11528048	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11594833	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11596841	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11812869	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11814844	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12219023	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12570633	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12573344	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12772494	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12778021	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12779258	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12780522	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1334579	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1334580	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1334581	0.92[ASN][1000 genomes]
rs1334582	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1418815	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1544217	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2016612	0.81[ASN][1000 genomes]
rs2027108	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2118824	0.81[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs2118825	0.98[ASN][1000 genomes]
rs2141375	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2420498	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28849130	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3885867	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3885868	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3981165	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4397747	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4411211	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4423105	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4553280	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4639845	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4639846	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4933202	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4933627	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4933629	0.92[ASN][1000 genomes]
rs4933630	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4933632	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4933636	0.81[CEU][hapmap]
rs6583740	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6583741	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6583743	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7067705	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7071167	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7071323	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7071533	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7075411	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7079028	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7083495	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7093432	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7095281	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7096430	0.81[ASN][1000 genomes]
rs7099297	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7099420	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7099639	0.85[EUR][1000 genomes]
rs7099671	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs747334	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7895456	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7897141	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7897403	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7897603	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7897624	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7906208	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7916859	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7917623	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831945	chr10:92590576-92793582	Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:92729200-92744400	Weak transcription	Psoas Muscle	Psoas
2	chr10:92733600-92743800	Weak transcription	Right Atrium	heart
3	chr10:92737400-92743800	Weak transcription	Right Ventricle	heart
4	chr10:92738000-92743400	Weak transcription	GM12878-XiMat	blood
5	chr10:92738000-92743600	Weak transcription	Primary B cells from peripheral blood	blood
6	chr10:92739200-92743800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr10:92739400-92746000	Weak transcription	Aorta	Aorta
8	chr10:92742000-92743600	Enhancers	Thymus	Thymus
9	chr10:92742800-92747200	Enhancers	Left Ventricle	heart
10	chr10:92742800-92750000	Enhancers	Fetal Thymus	thymus
11	chr10:92743000-92743400	Enhancers	Dnd41	blood
12	chr10:92743200-92745400	Enhancers	Fetal Heart	heart

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