Variant report

Variant	rs7096430
Chromosome Location	chr10:92764460-92764461
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11186408	0.81[ASN][1000 genomes]
rs2016612	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2901176	0.81[ASN][1000 genomes]
rs4933636	0.82[CEU][hapmap]
rs6583743	0.81[ASN][1000 genomes]
rs7076190	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs747334	0.81[ASN][1000 genomes]
rs7897249	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831945	chr10:92590576-92793582	Active TSS Enhancers Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7096430	LOC643599	cis	multi-tissue	Pritchard

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:92744200-92766200	Weak transcription	Right Ventricle	heart
2	chr10:92754400-92765400	Weak transcription	Thymus	Thymus
3	chr10:92756400-92766400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr10:92760000-92765600	ZNF genes & repeats	GM12878-XiMat	blood
5	chr10:92760600-92766200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr10:92761400-92766200	Enhancers	Dnd41	blood
7	chr10:92761800-92782800	Weak transcription	Aorta	Aorta
8	chr10:92763000-92765800	Weak transcription	HSMMtube	muscle
9	chr10:92763800-92764600	Enhancers	Fetal Intestine Small	intestine
10	chr10:92764200-92764800	Enhancers	Breast Myoepithelial Primary Cells	Breast
11	chr10:92764200-92764800	Enhancers	HepG2	liver
12	chr10:92764400-92765000	Enhancers	Fetal Intestine Large	intestine

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links